Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_F02
         (146 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09789-1|AAA18501.1|  737|Drosophila melanogaster cytoplasmic ba...    58   2e-09
BT003476-1|AAO39479.1|  711|Drosophila melanogaster RE59350p pro...    58   2e-09
AE014298-904|AAF46170.1|  738|Drosophila melanogaster CG3929-PA ...    58   2e-09

>U09789-1|AAA18501.1|  737|Drosophila melanogaster cytoplasmic basic
           protein protein.
          Length = 737

 Score = 57.6 bits (133), Expect = 2e-09
 Identities = 28/46 (60%), Positives = 34/46 (73%)
 Frame = +3

Query: 9   VGFPRHSLLPDTPLGRQVLAALRCAWEQRLLFGVCASQTTGREHVV 146
           VGFPR   LPD PLGR+VL  L+ A+++RLLF +  S TTGRE VV
Sbjct: 658 VGFPRICYLPDCPLGRKVLRFLKIAFDRRLLFSIGRSVTTGREDVV 703


>BT003476-1|AAO39479.1|  711|Drosophila melanogaster RE59350p
           protein.
          Length = 711

 Score = 57.6 bits (133), Expect = 2e-09
 Identities = 28/46 (60%), Positives = 34/46 (73%)
 Frame = +3

Query: 9   VGFPRHSLLPDTPLGRQVLAALRCAWEQRLLFGVCASQTTGREHVV 146
           VGFPR   LPD PLGR+VL  L+ A+++RLLF +  S TTGRE VV
Sbjct: 632 VGFPRICYLPDCPLGRKVLRFLKIAFDRRLLFSIGRSVTTGREDVV 677


>AE014298-904|AAF46170.1|  738|Drosophila melanogaster CG3929-PA
           protein.
          Length = 738

 Score = 57.6 bits (133), Expect = 2e-09
 Identities = 28/46 (60%), Positives = 34/46 (73%)
 Frame = +3

Query: 9   VGFPRHSLLPDTPLGRQVLAALRCAWEQRLLFGVCASQTTGREHVV 146
           VGFPR   LPD PLGR+VL  L+ A+++RLLF +  S TTGRE VV
Sbjct: 659 VGFPRICYLPDCPLGRKVLRFLKIAFDRRLLFSIGRSVTTGREDVV 704


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,259,892
Number of Sequences: 53049
Number of extensions: 88357
Number of successful extensions: 350
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 24,988,368
effective HSP length: 29
effective length of database: 23,449,947
effective search space used: 445548993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)