Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_F02
         (146 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L26987-1|AAA62312.1|  627|Caenorhabditis elegans par-2 protein.        25   7.3  
AF106580-1|AAK73890.3|  582|Caenorhabditis elegans Abnormal embr...    25   7.3  
Z82089-4|CAB54513.2| 4648|Caenorhabditis elegans Hypothetical pr...    25   9.7  
Z81499-6|CAB54224.2| 4648|Caenorhabditis elegans Hypothetical pr...    25   9.7  
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p...    25   9.7  
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr...    25   9.7  

>L26987-1|AAA62312.1|  627|Caenorhabditis elegans par-2 protein.
          Length = 627

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 86  PRTPERRQHLSPEWRVRQQRMPRKPDP 6
           P TP RR+ LSP  R  +  +   P+P
Sbjct: 178 PITPHRRRPLSPSARPAKSSLKIPPEP 204


>AF106580-1|AAK73890.3|  582|Caenorhabditis elegans Abnormal
           embryonic partitioningof cytoplasm protein 2, isoform b
           protein.
          Length = 582

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 86  PRTPERRQHLSPEWRVRQQRMPRKPDP 6
           P TP RR+ LSP  R  +  +   P+P
Sbjct: 132 PITPHRRRPLSPSARPAKSSLKIPPEP 158


>Z82089-4|CAB54513.2| 4648|Caenorhabditis elegans Hypothetical protein
            ZK270.2d protein.
          Length = 4648

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 110  HAEQQPLLPRTPERRQHLSPEWRV 39
            H +Q P  P+ PE R H SP  RV
Sbjct: 4331 HEDQLP--PKKPEHRTHKSPGRRV 4352


>Z81499-6|CAB54224.2| 4648|Caenorhabditis elegans Hypothetical protein
            ZK270.2d protein.
          Length = 4648

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 110  HAEQQPLLPRTPERRQHLSPEWRV 39
            H +Q P  P+ PE R H SP  RV
Sbjct: 4331 HEDQLP--PKKPEHRTHKSPGRRV 4352


>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
            protein 44, isoform f protein.
          Length = 6994

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -1

Query: 104  EQQPLLPRTPERRQHLSP 51
            EQ+ LLP++PER+  ++P
Sbjct: 4477 EQEKLLPKSPERQVLVNP 4494


>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
            protein.
          Length = 6994

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -1

Query: 104  EQQPLLPRTPERRQHLSP 51
            EQ+ LLP++PER+  ++P
Sbjct: 4477 EQEKLLPKSPERQVLVNP 4494


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,490,742
Number of Sequences: 27780
Number of extensions: 39330
Number of successful extensions: 159
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 12,740,198
effective HSP length: 29
effective length of database: 11,934,578
effective search space used: 226756982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)