Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_F01
         (514 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni...    30   0.23 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   0.94 
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc...    25   5.0  
SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr 3...    25   6.7  
SPAC821.12 |orb6||serine/threonine protein kinase Orb6|Schizosac...    25   6.7  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    25   6.7  
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    25   8.8  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    25   8.8  
SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase |Sch...    25   8.8  

>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
           Rad15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 772

 Score = 29.9 bits (64), Expect = 0.23
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -2

Query: 462 RTPTFSHFVERYVQFTLHTFQLLLVISSAPRVFFNEIKDVLLV 334
           R   F  F++R+V++     ++L VI+  P  F   +KD+  +
Sbjct: 324 RAEHFIAFLKRFVEYLKTRMKVLHVIAETPTSFLQHVKDITFI 366


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.9 bits (59), Expect = 0.94
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +2

Query: 233 SSQPSLQLTLFTEMYIHPFSTDLISYRFPSSSMATSRTSFIS 358
           SS+PS+     T    + +S+ + SY  P++S   S TSF S
Sbjct: 81  SSEPSIFSESATPSETNSYSSPVSSYSDPATSQLPSSTSFFS 122


>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 920

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = -2

Query: 471 VCVRTPTFSHFVERYVQFTLHTFQLLLVISSAPRVFFNE-IKDVLLVA 331
           V +R+   + + E+  Q+ L TFQL   + S P V F+E + ++ LVA
Sbjct: 821 VVLRSKQLNFYAEKGGQY-LDTFQLSKTVVSIPMVNFSEAVSNLGLVA 867


>SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 449

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +1

Query: 139 LNNLAPKRIGSDSEPPFGRGILVSRNSRGRAV-VTAVPSANAIYRDVYTSVF 291
           +  LA   + S + PPFG     SR S   A+ +  V ++  +Y +V    F
Sbjct: 42  VGELATSNLPSPAHPPFGELHQESRTSNSSAMHIENVVASRLMYNEVANGSF 93


>SPAC821.12 |orb6||serine/threonine protein kinase
           Orb6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 469

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -3

Query: 239 VTTARPLELRDTRIPRPNGGSESEPIRFGAKLLSESDFN 123
           + T R  E R  R  R +G  ES+ +RF    LS  DF+
Sbjct: 56  LATERGSEERKNRQLRASGEKESQFLRFRRTRLSLEDFS 94


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1375

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -1

Query: 466  RKNAHFQSLRGTLRSIYPAYVSAVACHQQRATC 368
            RK AHF+S R  L ++Y   V     HQ    C
Sbjct: 1063 RKIAHFESRRRYLTNLYEHIVLKAESHQICIIC 1095


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -1

Query: 478 FSRLRKNAHFQSLRGTLRSIYPAYVSAVAC 389
           F +LRKN HF        S+    V+  AC
Sbjct: 9   FHKLRKNEHFLKYSAIFYSLLKPVVALFAC 38


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +2

Query: 194 VGSSCHVILEDAQSSQPSLQLTLFTEMYIHPFSTDLISY 310
           +GS   +   D  S Q  ++L  F  +Y+ PF+  +  Y
Sbjct: 1   MGSKALITSPDISSGQLYIKLPTFFHLYVWPFALFVYPY 39


>SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 368

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 12/54 (22%), Positives = 23/54 (42%)
 Frame = +1

Query: 244 VPSANAIYRDVYTSVFNRSHLLPFSFVVHGDQQDVFYFVKEDTWRAADDKQQLK 405
           VP+    YRD Y +VF         F +  DQ      + E  +++++    ++
Sbjct: 314 VPTVQGNYRDFYDAVFEEILKKANEFPIKSDQVLAVEKIMEAAYKSSESSSSIQ 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,041,010
Number of Sequences: 5004
Number of extensions: 39065
Number of successful extensions: 146
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)