Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_F01
(514 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0601 - 5268520-5271112,5272448-5272950 28 3.8
03_02_0061 + 5342338-5342401,5343025-5343131,5343962-5344009,534... 28 3.8
11_04_0411 - 17367432-17368247,17368317-17368658,17372221-17372793 28 5.1
08_02_0386 - 16575636-16575698,16575799-16575858,16575947-165762... 28 5.1
05_06_0005 + 24802843-24803101,24804086-24804333,24804417-248045... 28 5.1
04_01_0628 - 8266494-8266501,8266578-8266875,8268055-8268313,826... 28 5.1
05_07_0260 - 28739035-28739085,28739316-28739596,28740545-287405... 27 8.8
02_04_0404 + 22626709-22628601 27 8.8
01_05_0788 + 25223373-25223405,25224285-25224373,25224496-252246... 27 8.8
>08_01_0601 - 5268520-5271112,5272448-5272950
Length = 1031
Score = 28.3 bits (60), Expect = 3.8
Identities = 22/84 (26%), Positives = 35/84 (41%)
Frame = -3
Query: 296 LLKTDVYTSR*IALAEGTAVTTARPLELRDTRIPRPNGGSESEPIRFGAKLLSESDFNAD 117
L++TD R A++ AV E RDT + G+ +L + ++ D
Sbjct: 550 LVETDAAGGRVAAVSVHQAVLDFAQAEARDTNFLHVHSGAAGLSNGAARRLALRNTYDTD 609
Query: 116 IVGMERLLKSAILLLDMWERKPDS 45
+ M K LL D+ ER D+
Sbjct: 610 LAVMLEAPKLHTLLCDIPERAADA 633
>03_02_0061 +
5342338-5342401,5343025-5343131,5343962-5344009,
5344297-5344399,5345152-5345234,5345271-5346089,
5346189-5346338,5346420-5346797
Length = 583
Score = 28.3 bits (60), Expect = 3.8
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -3
Query: 452 LSVTSWNVTFNLPCIRFSCCLSSAARHV 369
LS++S+NV +N PC S S+ RH+
Sbjct: 239 LSLSSYNVDYNFPCSLLSDGRGSSLRHL 266
>11_04_0411 - 17367432-17368247,17368317-17368658,17372221-17372793
Length = 576
Score = 27.9 bits (59), Expect = 5.1
Identities = 23/77 (29%), Positives = 34/77 (44%)
Frame = +1
Query: 106 IPTMSALKSDSLNNLAPKRIGSDSEPPFGRGILVSRNSRGRAVVTAVPSANAIYRDVYTS 285
+P + + S + PK G S+ PFG G S +RG+A+ S+ D TS
Sbjct: 80 LPPLLSTPPGSRAGVKPKEEGESSQRPFGPGAATS--TRGKAI--REESSPLSPPDKSTS 135
Query: 286 VFNRSHLLPFSFVVHGD 336
F +S F+ GD
Sbjct: 136 PFPKSPRSVFNHQEFGD 152
>08_02_0386 -
16575636-16575698,16575799-16575858,16575947-16576239,
16576361-16576517,16576601-16576948,16577047-16577177,
16577417-16577882,16578425-16579132
Length = 741
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -3
Query: 239 VTTARPLELRDTRIPRPNGGSES 171
+ R LEL D R P PNGG S
Sbjct: 83 IRKVRSLELSDPRTPSPNGGGGS 105
>05_06_0005 +
24802843-24803101,24804086-24804333,24804417-24804572,
24804956-24805114,24805862-24805929,24806044-24806433,
24806515-24806563,24806636-24806788,24807416-24807589,
24808207-24808362,24808705-24808756,24808830-24808988,
24809058-24809094,24809218-24809252,24809349-24809400,
24809614-24809663,24810590-24811924,24812688-24812825,
24812907-24812957,24813081-24814237
Length = 1625
Score = 27.9 bits (59), Expect = 5.1
Identities = 23/72 (31%), Positives = 33/72 (45%)
Frame = +1
Query: 22 SLLPSVIIESGFLSHMSNKRIADFRSLSIPTMSALKSDSLNNLAPKRIGSDSEPPFGRGI 201
SLL V +++ FLS + + + S P S S +N P GSDS PF
Sbjct: 668 SLLKIVTVQAEFLSVPAKRGDNSSGAPSGPFGSEADKPSWDNGLPS-FGSDSWQPFSSAA 726
Query: 202 LVSRNSRGRAVV 237
L +N+ G + V
Sbjct: 727 LPVQNADGESEV 738
>04_01_0628 -
8266494-8266501,8266578-8266875,8268055-8268313,
8268892-8269052,8269553-8269884,8270947-8271265,
8271335-8271420,8271600-8271684
Length = 515
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -1
Query: 490 SVRVFSRLRKNAHFQSLRGTL 428
SV +F L KN+H +SLRGT+
Sbjct: 88 SVELFPTLAKNSHDRSLRGTV 108
>05_07_0260 -
28739035-28739085,28739316-28739596,28740545-28740572,
28740653-28740749,28741216-28741272,28741353-28741415,
28741533-28741621,28741779-28741865,28742041-28742162,
28742245-28742500,28742595-28742744,28743120-28743278,
28743820-28743892,28743968-28744024,28744115-28744243,
28744469-28744560,28745220-28745252
Length = 607
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -2
Query: 483 VYFHVCVRTPTFSHFVERYVQFTLHTFQLLLVISSA 376
VYF++C RT F + Y + +LL+I+SA
Sbjct: 112 VYFYICDRTNIFPETKKSYNRDLFLFLYILLIIASA 147
>02_04_0404 + 22626709-22628601
Length = 630
Score = 27.1 bits (57), Expect = 8.8
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +1
Query: 1 ARGPSAMSLLPSVIIESGFLSHMSNKRIADFRSLSIPTMSALKSDSLNNLAPKRIGSDSE 180
ARG A + SV+ G +S + +R+A + + AL + + LAP+ S
Sbjct: 35 ARGRGAFGVR-SVVFSVGGMSSSARRRLAARLRSELAGVRALLAKAAGFLAPEGAAPSSS 93
Query: 181 PP 186
PP
Sbjct: 94 PP 95
>01_05_0788 +
25223373-25223405,25224285-25224373,25224496-25224624,
25224710-25224766,25224844-25224916,25225509-25225667,
25226755-25226904,25227013-25227268,25227358-25227479,
25227531-25227599,25227653-25227739,25227842-25227930,
25228168-25228224,25229162-25229258,25229348-25229506
Length = 541
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -2
Query: 483 VYFHVCVRTPTFSHFVERYVQFTLHTFQLLLVISSA 376
VYF++C RT F + Y + +LL+I+SA
Sbjct: 111 VYFYICDRTNIFPESKKSYNRDLFLFLYILLIIASA 146
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,289,130
Number of Sequences: 37544
Number of extensions: 253706
Number of successful extensions: 747
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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