Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_E24
         (564 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.10 |||prefoldin subunit 2 |Schizosaccharomyces pombe|chr...    75   5e-15
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei...    29   0.62 
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    28   1.1  
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy...    28   1.1  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    27   1.4  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   3.3  
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo...    26   4.4  

>SPAC227.10 |||prefoldin subunit 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 114

 Score = 75.4 bits (177), Expect = 5e-15
 Identities = 35/97 (36%), Positives = 61/97 (62%)
 Frame = +3

Query: 177 FQSLRTEQRQIGSKISELQMDLNEHKIVIETLRGVEGSRKCFRMVGGVLVERTVADVLPE 356
           + S ++  +QI  KI +L+ D +EHK+V++TL  ++ +R+CFRM+ GVLVERTV  V+P 
Sbjct: 15  YNSYKSRLQQIAQKIVDLETDADEHKLVMDTLNSMDNNRRCFRMIHGVLVERTVGTVVPI 74

Query: 357 LENNCMQLPKAVQALEEQLAKKGEEINKYVECHDIRI 467
           L+     +  A+  L +Q  +   E  K+ + + I++
Sbjct: 75  LKTTQEGIQTAMNGLLDQYKQLEAEFQKFQKDNKIQV 111


>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
           Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 28.7 bits (61), Expect = 0.62
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
 Frame = +3

Query: 189 RTEQ-RQIGSKISELQMDLNEHKIVIETLRG----VEGSRKCFRMVGGVLVE--RTVADV 347
           RT Q   + SKI E + DLN  K+  ETLR     +E      ++  G L E  R + + 
Sbjct: 75  RTLQIESLESKIGEQERDLNNEKLASETLREKTQLLEKENGALKVENGYLYEKSRKLEEE 134

Query: 348 LPELENNC 371
           +  L+  C
Sbjct: 135 MAHLKKKC 142


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 433 LTSTLSVTTFAFSEQTALPLTTHLTSLLNP 522
           + ST+ V T A S QTA+P T H ++   P
Sbjct: 783 IASTVPVQTAAPSSQTAVPQTIHQSNAFTP 812


>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 385

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +1

Query: 430 KLTSTLSVTTFAFSEQTALPLTTHLTSLLNPMYGLLVV 543
           + TST++  T + S  T +P++TH +S  N   G L +
Sbjct: 43  EFTSTITPETPSSSSSTFVPISTHTSSATNTTSGQLSI 80


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 10/46 (21%), Positives = 24/46 (52%)
 Frame = +3

Query: 324 VERTVADVLPELENNCMQLPKAVQALEEQLAKKGEEINKYVECHDI 461
           +   + + LP++  +C +LP  +  + E++ +K  +  +Y  C  I
Sbjct: 243 IRSILTEPLPDISKSCPKLPHLIFKIIEKMTRKNPD-ERYTSCSGI 287


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 16/58 (27%), Positives = 24/58 (41%)
 Frame = -1

Query: 369 SCSPVPVGHQLRCALPVRRPPCGSTFESPPPRAMSRSQFCARLDPFATLIFCSRSASV 196
           S S  P G+      P   P   S+  +PPP A + S   +     +T   C+ S S+
Sbjct: 342 STSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSI 399


>SPBC27.02c |ask1|mug181|DASH complex subunit
           Ask1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +1

Query: 76  NLIIILRENDYNLSKCQNLTLNPVKSLTRKYSRDFN 183
           ++ + L E D N SKC       +  +  KY+++ N
Sbjct: 13  SITLALYEIDANFSKCHRTVTTKILPIVEKYAKNCN 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,961,700
Number of Sequences: 5004
Number of extensions: 35898
Number of successful extensions: 120
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)