Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_E24
(564 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0365 + 18045340-18045783 90 1e-18
11_06_0122 + 20333025-20333468 89 2e-18
03_03_0198 + 15361048-15361746,15361854-15361946,15362035-153621... 30 1.5
02_01_0355 + 2558792-2558862,2558993-2559099,2559185-2559615,256... 30 1.5
04_01_0069 - 697811-697876,697956-698166,698265-698359,698448-69... 29 2.6
03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,324... 29 3.4
01_06_1052 + 34129126-34130490 29 3.4
11_04_0454 - 17895935-17896093,17896878-17896911,17897114-178972... 28 4.5
10_08_0543 - 18649894-18650233,18651446-18651981 27 7.8
04_04_1588 - 34633057-34633824 27 7.8
04_04_1129 - 31107892-31110246 27 7.8
03_03_0048 + 14065317-14065433,14065646-14065726,14066566-140669... 27 7.8
>12_02_0365 + 18045340-18045783
Length = 147
Score = 90.2 bits (214), Expect = 1e-18
Identities = 41/97 (42%), Positives = 68/97 (70%)
Frame = +3
Query: 177 FQSLRTEQRQIGSKISELQMDLNEHKIVIETLRGVEGSRKCFRMVGGVLVERTVADVLPE 356
+ ++R+E Q+ SKI+EL+M+++EH +VI + ++ SR+C+RM+GGVLVERT+ +VLP
Sbjct: 22 YANMRSEMNQLYSKITELEMEVSEHSLVIGAIEPLDPSRRCYRMIGGVLVERTIKEVLPA 81
Query: 357 LENNCMQLPKAVQALEEQLAKKGEEINKYVECHDIRI 467
++ N L + V + E L KK +EI ++ + IRI
Sbjct: 82 VQRNKEGLEEVVARMNEALEKKKKEITEFELKYKIRI 118
>11_06_0122 + 20333025-20333468
Length = 147
Score = 89.0 bits (211), Expect = 2e-18
Identities = 43/104 (41%), Positives = 71/104 (68%), Gaps = 1/104 (0%)
Frame = +3
Query: 159 EEIFAG-FQSLRTEQRQIGSKISELQMDLNEHKIVIETLRGVEGSRKCFRMVGGVLVERT 335
E+I A + ++R+E Q+ +KI+EL+M+++EH +VI + ++ SR+C+RMVGGVLVERT
Sbjct: 15 EQIIANTYGNMRSEMTQLYTKITELEMEVSEHSLVIGAIEPLDHSRRCYRMVGGVLVERT 74
Query: 336 VADVLPELENNCMQLPKAVQALEEQLAKKGEEINKYVECHDIRI 467
+ +VLP + N L + + + E L KK +EI ++ + IRI
Sbjct: 75 IREVLPAVHRNKEGLEEVIARMHEALEKKKKEITEFELKYKIRI 118
>03_03_0198 +
15361048-15361746,15361854-15361946,15362035-15362102,
15362255-15362393,15362481-15362483
Length = 333
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -1
Query: 330 ALPVRRPPCGSTFESPPPRAMSRSQFCARLDPFA 229
A P RRPPC +F R + R F A L PF+
Sbjct: 17 AAPRRRPPCVLSFSLARDRFLRRRFFSAGLRPFS 50
>02_01_0355 +
2558792-2558862,2558993-2559099,2559185-2559615,
2560100-2560735
Length = 414
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 88 ILRENDYNLSKCQNLTLNPVKSLTRKYSRDFNLYGQNRG 204
IL++ DY L +CQ+L L P + L ++ + G G
Sbjct: 99 ILQQLDYGLVECQSLVLAPTRELAQQIEKVMRALGDYLG 137
>04_01_0069 -
697811-697876,697956-698166,698265-698359,698448-698513,
698595-698643,698720-698770,698856-698908,699263-699331,
699874-699928,700011-700099,700217-700302,700376-700432,
700575-700716,701637-702032
Length = 494
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 369 SCSPVPVGHQLRCALPVRRPPCGSTFESPPPRA 271
+ SP+P+ + P R PP +T PPP A
Sbjct: 54 AASPIPIFRAAASSRPPRPPPPSTTTAPPPPAA 86
>03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,
3242494-3242836,3244138-3248540,3248928-3249107,
3249108-3250892,3251055-3252173
Length = 2727
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +3
Query: 324 VERTVADVLPELENNCMQLPKAVQALEEQLAKKGEEIN 437
+E + D L E+E N K Q LEE LA K +E+N
Sbjct: 1001 LEAQLLDALSEVEEN----KKEAQLLEENLAHKNDELN 1034
>01_06_1052 + 34129126-34130490
Length = 454
Score = 28.7 bits (61), Expect = 3.4
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = -1
Query: 375 AYSCSPVPVGHQLRCALPVRRPPCGSTFESPPPRAMSRSQFCA 247
AYS + + H A RR +T PPP A+SRSQF A
Sbjct: 139 AYSVTSIGEYHSGPLARKPRRGGTNATAPPPPP-ALSRSQFAA 180
>11_04_0454 -
17895935-17896093,17896878-17896911,17897114-17897252,
17897487-17897561,17897666-17897945
Length = 228
Score = 28.3 bits (60), Expect = 4.5
Identities = 18/43 (41%), Positives = 21/43 (48%)
Frame = +1
Query: 427 RKLTSTLSVTTFAFSEQTALPLTTHLTSLLNPMYGLLVVKLAL 555
R L S S AF TAL L TH+T L P Y + V L +
Sbjct: 155 RPLPSLPSTGQSAFPSATALHLYTHIT--LKPSYAMYYVDLVM 195
>10_08_0543 - 18649894-18650233,18651446-18651981
Length = 291
Score = 27.5 bits (58), Expect = 7.8
Identities = 19/45 (42%), Positives = 23/45 (51%)
Frame = -1
Query: 411 AVPRAPERLWAIAYSCSPVPVGHQLRCALPVRRPPCGSTFESPPP 277
AV A LWA A S SPV V + A V + GS+ +PPP
Sbjct: 80 AVAVAVAELWAAARSASPVAVIAAVAGAAVVYK--VGSSLLAPPP 122
>04_04_1588 - 34633057-34633824
Length = 255
Score = 27.5 bits (58), Expect = 7.8
Identities = 14/52 (26%), Positives = 21/52 (40%)
Frame = -1
Query: 399 APERLWAIAYSCSPVPVGHQLRCALPVRRPPCGSTFESPPPRAMSRSQFCAR 244
AP+ + S G + + + RP + PPPR SR + C R
Sbjct: 17 APDSQQQVGKGRSTASYGEKEQLPITAPRPYAPAPLPPPPPRRRSRGRRCCR 68
>04_04_1129 - 31107892-31110246
Length = 784
Score = 27.5 bits (58), Expect = 7.8
Identities = 19/47 (40%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = -1
Query: 360 PVPVGHQL-RCALPVRRPPCGSTFESPPPRAMSRSQFCARLDPFATL 223
P GHQL R LP+RR P PPP + F R P A L
Sbjct: 162 PPRPGHQLLRTPLPLRRYP--RPPRHPPPSPRPSTPFSPRSPPMALL 206
>03_03_0048 +
14065317-14065433,14065646-14065726,14066566-14066967,
14067131-14067199,14067278-14067360,14067503-14067555,
14067659-14067780,14068033-14068386,14068479-14068578,
14068663-14068895
Length = 537
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -1
Query: 363 SPVPVGHQLRCALPVR-RPPCGSTFESPPPRAMSRSQ 256
SP P L CA P RP +T +PPP ++ ++
Sbjct: 166 SPTPRAASLACAAPTAPRPSSRTTTTAPPPPSLPATE 202
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,949,477
Number of Sequences: 37544
Number of extensions: 261489
Number of successful extensions: 1022
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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