Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_E24
         (564 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006661-3|AAF39891.1|  141|Caenorhabditis elegans Temporarily a...    83   2e-16
Z70312-3|CAA94385.1|  172|Caenorhabditis elegans Hypothetical pr...    30   1.3  
AC024776-19|AAK68480.2|  398|Caenorhabditis elegans Hypothetical...    30   1.3  
Z48585-6|CAA88481.1|  284|Caenorhabditis elegans Hypothetical pr...    29   1.7  
AF285179-1|AAG15377.1|  706|Caenorhabditis elegans zygote defect...    29   2.3  
AF003386-12|AAB54253.2|  706|Caenorhabditis elegans Zygote defec...    29   2.3  
U41031-3|AAA82620.1|  164|Caenorhabditis elegans Hypothetical pr...    28   5.3  
U21308-15|AAB93316.2|  412|Caenorhabditis elegans Hypothetical p...    28   5.3  
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l...    27   9.3  
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p...    27   9.3  
AC024859-11|AAK29981.1|  933|Caenorhabditis elegans Hypothetical...    27   9.3  
AC024859-10|ABA00158.1|  832|Caenorhabditis elegans Hypothetical...    27   9.3  

>AC006661-3|AAF39891.1|  141|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 355 protein.
          Length = 141

 Score = 82.6 bits (195), Expect = 2e-16
 Identities = 35/97 (36%), Positives = 64/97 (65%)
 Frame = +3

Query: 177 FQSLRTEQRQIGSKISELQMDLNEHKIVIETLRGVEGSRKCFRMVGGVLVERTVADVLPE 356
           F++LR +Q+ I ++++ ++ +  E   V+E ++ +E  +KCFR++   LVE TV DV+P+
Sbjct: 24  FKALRDQQQDIAAEVTRIEEERREFGRVLEVIKDLEPDQKCFRLISDTLVEYTVKDVIPD 83

Query: 357 LENNCMQLPKAVQALEEQLAKKGEEINKYVECHDIRI 467
           L+NN   L    + L +QL +KG+E+N +   H+IR+
Sbjct: 84  LQNNIANLTIVSKQLNDQLVEKGKELNTHKTTHNIRL 120


>Z70312-3|CAA94385.1|  172|Caenorhabditis elegans Hypothetical
           protein ZC168.5 protein.
          Length = 172

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 342 QLRCALPVRRPPCGSTFESPPP 277
           Q  C  P   PPCG  +E+PPP
Sbjct: 35  QCCCPPPPPPPPCGGGYEAPPP 56


>AC024776-19|AAK68480.2|  398|Caenorhabditis elegans Hypothetical
           protein Y41D4B.6 protein.
          Length = 398

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/45 (33%), Positives = 27/45 (60%)
 Frame = +2

Query: 167 IRGISISTDRTEADREQNIRVANGSKRAQNCDRDIARGGGLSKVL 301
           I GIS++  R++++ E+N     G+K  +N D  I +   LS++L
Sbjct: 230 IPGISVTMSRSDSESEKN---DEGNKNEENTDSGITKHSRLSEIL 271


>Z48585-6|CAA88481.1|  284|Caenorhabditis elegans Hypothetical
           protein ZK673.6 protein.
          Length = 284

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 15/41 (36%), Positives = 26/41 (63%)
 Frame = +3

Query: 324 VERTVADVLPELENNCMQLPKAVQALEEQLAKKGEEINKYV 446
           VE+T   +LP+L + C +  KAV  L+EQ  ++ + + +YV
Sbjct: 177 VEKT--QILPDLRDQCTKYHKAVHTLDEQ-CRELDNLKEYV 214


>AF285179-1|AAG15377.1|  706|Caenorhabditis elegans zygote
           defective-1 protein.
          Length = 706

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/59 (23%), Positives = 29/59 (49%)
 Frame = +3

Query: 216 KISELQMDLNEHKIVIETLRGVEGSRKCFRMVGGVLVERTVADVLPELENNCMQLPKAV 392
           ++ E+   +  H+I   T+RG  G  +   +     V  + + +  E++N+ M+L K V
Sbjct: 398 EVDEMVQTVYVHRIPDRTVRGRNGEEELITLTNNPFVYTSYSQMPKEVQNDYMRLQKMV 456


>AF003386-12|AAB54253.2|  706|Caenorhabditis elegans Zygote
           defective: embryonic lethalprotein 1 protein.
          Length = 706

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/59 (23%), Positives = 29/59 (49%)
 Frame = +3

Query: 216 KISELQMDLNEHKIVIETLRGVEGSRKCFRMVGGVLVERTVADVLPELENNCMQLPKAV 392
           ++ E+   +  H+I   T+RG  G  +   +     V  + + +  E++N+ M+L K V
Sbjct: 398 EVDEMVQTVYVHRIPDRTVRGRNGEEELITLTNNPFVYTSYSQMPKEVQNDYMRLQKMV 456


>U41031-3|AAA82620.1|  164|Caenorhabditis elegans Hypothetical
           protein C16B8.3 protein.
          Length = 164

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 378 IAYSCSPVPVGHQLRCALPVRRPPCGSTFESPPP 277
           + Y   P PVG  +  A P  R P G+T+  PPP
Sbjct: 35  LPYGAPPPPVGAGVGYAPPPPR-PYGATYAPPPP 67


>U21308-15|AAB93316.2|  412|Caenorhabditis elegans Hypothetical
           protein ZK1290.10 protein.
          Length = 412

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = +1

Query: 430 KLTSTLSVTTFAFSEQTALPLTTHL 504
           K TST S TT A    T+ P TTHL
Sbjct: 265 KTTSTYSTTTTAPVNTTSAPTTTHL 289


>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
            lineage protein 13 protein.
          Length = 2248

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -1

Query: 405  PRAPE-RLWAIAYSCSPVPVGHQLRCALPVRRPPCGSTFESPP 280
            PR+P+ RL  +  S  P+  G +L   LP R PP GS    PP
Sbjct: 1091 PRSPDYRLKQVKISALPIH-GVELN-RLPARDPPMGSFTVCPP 1131


>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
            protein LIN-13 protein.
          Length = 2248

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -1

Query: 405  PRAPE-RLWAIAYSCSPVPVGHQLRCALPVRRPPCGSTFESPP 280
            PR+P+ RL  +  S  P+  G +L   LP R PP GS    PP
Sbjct: 1091 PRSPDYRLKQVKISALPIH-GVELN-RLPARDPPMGSFTVCPP 1131


>AC024859-11|AAK29981.1|  933|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.15a protein.
          Length = 933

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
 Frame = +3

Query: 162 EIFAGFQSLRTEQRQIGSKISELQMDLNEHKIVIETLRG-VEGSRKCFRMVGGVLVERTV 338
           EI A   S  +++ +  S+++EL   L   +  +ET+RG V  ++K  RM     +   +
Sbjct: 612 EIPATEMSNESQRNEHASQLAELLHSLTSFETNVETVRGSVLANQKKLRMSEVEDMTEKL 671

Query: 339 ADVLPELENNCMQLPKAVQALEEQLAKKGEEI 434
            ++     N     P    A+E+Q+ +  E +
Sbjct: 672 TNIGRLAANLKTDFPPIQMAIEQQIKRDMERV 703


>AC024859-10|ABA00158.1|  832|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.15b protein.
          Length = 832

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
 Frame = +3

Query: 162 EIFAGFQSLRTEQRQIGSKISELQMDLNEHKIVIETLRG-VEGSRKCFRMVGGVLVERTV 338
           EI A   S  +++ +  S+++EL   L   +  +ET+RG V  ++K  RM     +   +
Sbjct: 511 EIPATEMSNESQRNEHASQLAELLHSLTSFETNVETVRGSVLANQKKLRMSEVEDMTEKL 570

Query: 339 ADVLPELENNCMQLPKAVQALEEQLAKKGEEI 434
            ++     N     P    A+E+Q+ +  E +
Sbjct: 571 TNIGRLAANLKTDFPPIQMAIEQQIKRDMERV 602


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,118,972
Number of Sequences: 27780
Number of extensions: 219131
Number of successful extensions: 803
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)