Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_E23
(365 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 30 0.098
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 27 0.91
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 26 1.6
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 26 2.1
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo... 25 3.7
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 25 4.9
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 24 6.4
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 24 6.4
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma... 24 6.4
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 24 6.4
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 24 6.4
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c... 24 8.5
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha... 24 8.5
SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr 2|... 24 8.5
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 30.3 bits (65), Expect = 0.098
Identities = 27/115 (23%), Positives = 44/115 (38%)
Frame = +2
Query: 14 PGSRPGSRAGSKPPSRHGSNLSLDSTDDAGTPSRIPMRKVXXXXXXXXXXXXXXXKLGLT 193
P + P S PPS G+N++ +S ++A T S + V +L +
Sbjct: 83 PKTTPVSLNAGVPPSNTGANITTNSNNNAQTISS-SSQSVGHIDNPSGLGTHGKVRLSIK 141
Query: 194 TPNGGSSRPRTPTGLLTPSGRSGSFASAEGQTPGKSRIPVIKEHHTNCNLNRQRT 358
GGS + TG T G + SAE + I + N N +++
Sbjct: 142 LSTGGSG-GSSVTGKRTAPGNPWAIRSAERLASNPTSIGTSSPESIDNNSNNKKS 195
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 27.1 bits (57), Expect = 0.91
Identities = 16/64 (25%), Positives = 26/64 (40%)
Frame = +2
Query: 56 SRHGSNLSLDSTDDAGTPSRIPMRKVXXXXXXXXXXXXXXXKLGLTTPNGGSSRPRTPTG 235
S G+ + + + + S+ + K +G+TT +G S PRTP G
Sbjct: 94 SNEGNEKNNEENNVVSSDSKEAITKESGAELESSEPASTNSNVGMTTRSGRQS-PRTPIG 152
Query: 236 LLTP 247
TP
Sbjct: 153 STTP 156
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 1.6
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 296 KSRIPVIKEHHTNCNLNRQ 352
K+++ IK H+ NC +NRQ
Sbjct: 272 KAKVEKIKSHNINCFINRQ 290
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 25.8 bits (54), Expect = 2.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 218 PRTPTGLLTPSGRSGSFASAEGQT 289
P T TG+ +GR G AS+ G T
Sbjct: 297 PDTNTGIWVVTGRMGEMASSHGST 320
>SPBC11C11.02 |imp2||contractile ring protein
Imp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 670
Score = 25.0 bits (52), Expect = 3.7
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -2
Query: 319 LNDWDTALPRCLSFRRGE 266
L D+D A+P +SFR+G+
Sbjct: 615 LYDYDAAIPEEISFRKGD 632
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 24.6 bits (51), Expect = 4.9
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 147 HRRHEPLQMLVSLASRHPT 203
HRRHEP + +S RH T
Sbjct: 152 HRRHEPYRTHLSRHHRHST 170
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 24.2 bits (50), Expect = 6.4
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 9/37 (24%)
Frame = +2
Query: 11 RPGSRPGSRAGSK---------PPSRHGSNLSLDSTD 94
+PG+ SR GSK PPS NLS S+D
Sbjct: 261 KPGNSLASRLGSKPKSFKRKHSPPSEENGNLSFHSSD 297
>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 418
Score = 24.2 bits (50), Expect = 6.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 29 GSRAGSKPPSRHGSNLSLDSTDDAGTPSRI 118
GS S+ S++ SNL+ S DD S++
Sbjct: 320 GSWVSSQDTSKNSSNLASASVDDVSEESQV 349
>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 835
Score = 24.2 bits (50), Expect = 6.4
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -3
Query: 294 PGVCPSAEANDPLLPLGVRSPVGVRGRDDPPLGV 193
PG E LLP R+P+ VR D P+ V
Sbjct: 136 PGFVEVLEGEIELLPNLPRTPIEVRNMGDRPIQV 169
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 24.2 bits (50), Expect = 6.4
Identities = 8/22 (36%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Frame = -2
Query: 136 CHFPHWYARW--CSRIICAIQR 77
C+ PHWY ++ C + C I++
Sbjct: 1117 CYDPHWYKKYGGCFGLECLIEQ 1138
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 24.2 bits (50), Expect = 6.4
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = -2
Query: 334 VSMVFLNDWDTALPRCLSFRRGERPTPATRCQESG 230
VS + D DT P+ FR+ P P T + G
Sbjct: 734 VSNINSTDRDTKQPKMHDFRQPLHPNPMTTLKRKG 768
>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 479
Score = 23.8 bits (49), Expect = 8.5
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -1
Query: 119 VCEMVFPHHLCYPETDLIHVL 57
VC +VF HH + L H++
Sbjct: 237 VCRLVFVHHATFCVNSLAHLI 257
>SPAC20G8.08c |fft1||fun thirty related protein
Fft1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 23.8 bits (49), Expect = 8.5
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 266 FASAEGQTPGKSRIPVIKEHHTNCN 340
F +G TP ++R +I + HTN N
Sbjct: 807 FLRLDGSTPVETRQQLIDDFHTNEN 831
>SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 342
Score = 23.8 bits (49), Expect = 8.5
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 248 SGRSGSFASAEGQTPGKSRI 307
SGR+ SF S +TP KS +
Sbjct: 297 SGRTDSFHSLNTETPSKSTV 316
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,613,017
Number of Sequences: 5004
Number of extensions: 30692
Number of successful extensions: 117
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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