Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_E23
(365 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0744 + 21121757-21122202,21122316-21122737,21122992-211231... 30 0.64
09_02_0571 + 10793000-10793782 29 0.85
09_04_0180 + 15367737-15367755,15368874-15369739 29 1.5
01_06_0790 + 32019972-32020101,32020461-32020657,32020790-320209... 29 1.5
01_05_0605 + 23603544-23604329 29 1.5
09_04_0260 - 16197522-16197669,16198027-16198130,16198508-161987... 28 2.6
06_03_0310 - 19453047-19453160,19453240-19453338,19453441-194535... 28 2.6
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892... 27 3.4
07_01_0633 - 4735298-4735485,4736083-4736114,4736203-4736297,473... 27 4.5
06_01_0116 - 907995-908813,909002-909286 27 4.5
05_01_0041 + 281427-281549,281671-281730,281822-281868,282013-28... 27 4.5
01_06_0528 + 30024338-30025135 27 4.5
12_02_0946 + 24675334-24676338,24676537-24676757,24678253-246783... 27 6.0
11_01_0124 + 975921-976589,1010229-1011290 27 6.0
08_02_1150 + 24709071-24710774 27 6.0
04_04_0844 - 28637393-28638118,28638206-28638283,28638431-286386... 27 6.0
03_02_0432 + 8392291-8392854 27 6.0
01_07_0176 - 41733845-41734834,41736058-41736588 27 6.0
09_04_0182 + 15376025-15376498 26 7.9
04_03_0073 - 10702352-10702619,10702702-10702836,10702915-10703594 26 7.9
03_05_0890 - 28547462-28547545,28548451-28548528,28548641-285488... 26 7.9
01_06_1023 + 33890733-33891034,33891171-33891258,33894253-338945... 26 7.9
>07_03_0744 +
21121757-21122202,21122316-21122737,21122992-21123117,
21123198-21123319,21123413-21123623,21123955-21124192,
21124284-21124431,21124547-21124879
Length = 681
Score = 29.9 bits (64), Expect = 0.64
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -3
Query: 330 VWCSLMTGIRLFPGVCPSAEANDPLLPLGVRSPVG 226
VWCSLM +R F G + + P LP V +PVG
Sbjct: 250 VWCSLMYSVRPFFGGRAMLQLSPP-LPPAVDTPVG 283
>09_02_0571 + 10793000-10793782
Length = 260
Score = 29.5 bits (63), Expect = 0.85
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = -3
Query: 357 VLCLLRLQLVWCSLMTGIRLFPGVCPSAEANDPLLPLGVRSPVGVRGRDDP 205
+L + +Q+V + G R+ G P E DPL P G P+G+ DDP
Sbjct: 152 ILAIWAVQVVLMGAVEGYRIAGG--PLGEVVDPLYPGGAFDPLGL--ADDP 198
>09_04_0180 + 15367737-15367755,15368874-15369739
Length = 294
Score = 28.7 bits (61), Expect = 1.5
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = -3
Query: 69 DPCLEGGFDPALDPGLEP 16
DP LE DPAL+P LEP
Sbjct: 21 DPALEPANDPALEPELEP 38
Score = 27.9 bits (59), Expect = 2.6
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -3
Query: 69 DPCLEGGFDPALDPGLEP 16
D LE DP LDP LEP
Sbjct: 9 DSTLEAALDPTLDPALEP 26
Score = 27.5 bits (58), Expect = 3.4
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -3
Query: 117 MRDGVPASSVLSRDRFDPCLEGGFDPALDPGLEP 16
M+ G+ DP L+ +PA DP LEP
Sbjct: 1 MKHGIGVLDSTLEAALDPTLDPALEPANDPALEP 34
>01_06_0790 +
32019972-32020101,32020461-32020657,32020790-32020993,
32021444-32021645,32021798-32021886,32022567-32022662,
32022710-32022814,32023516-32023556,32023685-32023777,
32023853-32023970,32024488-32024578,32024693-32024766,
32025008-32025187,32025643-32025681
Length = 552
Score = 28.7 bits (61), Expect = 1.5
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -1
Query: 101 PHHLCYPETDLIHVLKEASIQLLI 30
P L YPE +L+HV+ ++ I L++
Sbjct: 160 PLALSYPEAELLHVMNDSDISLIL 183
>01_05_0605 + 23603544-23604329
Length = 261
Score = 28.7 bits (61), Expect = 1.5
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = -3
Query: 357 VLCLLRLQLVWCSLMTGIRLFPGVCPSAEANDPLLPLGVRSPVGVRGRDDP 205
+L + +Q+V + G R+ G P E DPL P G P+G+ DDP
Sbjct: 153 ILAIWAVQVVLMGAVEGYRIAGG--PLGEVVDPLYPGGSFDPLGL--ADDP 199
>09_04_0260 -
16197522-16197669,16198027-16198130,16198508-16198719,
16198795-16198900,16199006-16199119,16199200-16199417,
16199837-16199900,16199982-16200335,16200609-16200767,
16201486-16202907
Length = 966
Score = 27.9 bits (59), Expect = 2.6
Identities = 26/100 (26%), Positives = 37/100 (37%), Gaps = 4/100 (4%)
Frame = +2
Query: 8 ARPGSRPGSRAGSKPPSRHGSNLSLDSTDDAGTPSRIPMRKVXXXXXXXXXXXXXX---- 175
A SRP +A +KPP G + D DD +P R R
Sbjct: 19 AAAASRP--KATAKPPLGAGYRDNDDDDDDFQSPPRASSRAARALKPSGNGAASRRPSKR 76
Query: 176 XKLGLTTPNGGSSRPRTPTGLLTPSGRSGSFASAEGQTPG 295
K + +G +RP P+GR+ S + G+T G
Sbjct: 77 LKPSSSCCSGKENRPAAAGSGRAPAGRAASKGAGVGETLG 116
>06_03_0310 -
19453047-19453160,19453240-19453338,19453441-19453513,
19453598-19453708,19453795-19453956,19454064-19454340,
19454542-19455160,19455256-19455471
Length = 556
Score = 27.9 bits (59), Expect = 2.6
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +2
Query: 215 RPRTPTGLLTPSGRSGSFASAEGQTPGKSRIPVIKEHHTNCNLN--RQRTP 361
+P PT +++PSG S S GQ +S + + + C ++ QRTP
Sbjct: 10 QPTIPTAMVSPSGNRSSCTST-GQVGSQSMNAMQTQDESTCPIDDITQRTP 59
>01_06_0565 +
30287253-30287502,30287522-30289010,30289133-30289277,
30289679-30289729
Length = 644
Score = 27.5 bits (58), Expect = 3.4
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = +2
Query: 191 TTPNGGSSRPRTPTGLLTPSGRSGSFASAEGQTPGKSRIP 310
TTP GG+ P G + PS SG+ S G S P
Sbjct: 450 TTPGGGNYPPAPTIGNVPPSPSSGTSPSTPGGGCSSSPTP 489
>07_01_0633 -
4735298-4735485,4736083-4736114,4736203-4736297,
4736414-4736487,4736682-4736817,4736902-4736965,
4737101-4737166,4737265-4737446,4737824-4737948,
4738031-4738169,4738250-4738369,4738675-4738746,
4738900-4738935,4739633-4739749,4739821-4739953,
4740053-4740156,4740243-4740370,4740880-4741010,
4741561-4741757,4743906-4744583
Length = 938
Score = 27.1 bits (57), Expect = 4.5
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 251 GRSGSFASAEGQTPGKSRIPVIKEH 325
G G+ A+A GQ P R+P IKE+
Sbjct: 906 GSGGNQAAAGGQPPAVRRLPQIKEN 930
>06_01_0116 - 907995-908813,909002-909286
Length = 367
Score = 27.1 bits (57), Expect = 4.5
Identities = 13/44 (29%), Positives = 18/44 (40%)
Frame = +2
Query: 197 PNGGSSRPRTPTGLLTPSGRSGSFASAEGQTPGKSRIPVIKEHH 328
P SRP P R+G AS G P + + + + HH
Sbjct: 17 PRAAFSRPPPSLAAAPPHHRAGGAASGYGSRPPLASLLLSRHHH 60
>05_01_0041 +
281427-281549,281671-281730,281822-281868,282013-282089,
285368-285440,286193-286281,286665-286711,286805-286885,
287011-287179,287381-287600,287679-287744,288194-288310,
288591-288628,288935-289032
Length = 434
Score = 27.1 bits (57), Expect = 4.5
Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Frame = +2
Query: 2 HEARPGSRPGS----RAGSKPPSRHGSNLSLDSTDDAGTPSR 115
H P RPGS R+ S PP R S L D G+P R
Sbjct: 300 HGGTPSRRPGSPIRRRSPSPPPRRLRSPRHLSPRRDRGSPIR 341
>01_06_0528 + 30024338-30025135
Length = 265
Score = 27.1 bits (57), Expect = 4.5
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = -3
Query: 357 VLCLLRLQLVWCSLMTGIRLFPGVCPSAEANDPLLPLGVRSPVGVRGRDDP 205
+L + Q+V + G R+ G P E DPL P G P+G+ DDP
Sbjct: 157 ILAIWGCQVVLMGAVEGYRVAGG--PLGEVVDPLYPGGSFDPLGL--ADDP 203
>12_02_0946 +
24675334-24676338,24676537-24676757,24678253-24678307,
24678446-24678571
Length = 468
Score = 26.6 bits (56), Expect = 6.0
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -3
Query: 108 GVPASSVLSRDRFDPCLEGGF-DPALDPGLEPGR 10
G A+S S R PC GGF DPA D +P R
Sbjct: 133 GGAAASPPSLTRLPPCFIGGFSDPAEDEYYKPYR 166
>11_01_0124 + 975921-976589,1010229-1011290
Length = 576
Score = 26.6 bits (56), Expect = 6.0
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 8 ARPGSRPGSRAGSKPPSRHG 67
A P S PG+ + S PP HG
Sbjct: 447 AAPSSHPGASSSSAPPPPHG 466
>08_02_1150 + 24709071-24710774
Length = 567
Score = 26.6 bits (56), Expect = 6.0
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = -1
Query: 173 HLQRLVPSMYAYLSLSSLVCEMVFPHHLCYPETDLIHVLKEAS 45
HL+R+VP + ++ L++ +C + FP T L ++L AS
Sbjct: 27 HLRRIVPLLPSHPHLAAALCAVHFPLFPSSSATFLHNILIRAS 69
>04_04_0844 -
28637393-28638118,28638206-28638283,28638431-28638607,
28639124-28639537
Length = 464
Score = 26.6 bits (56), Expect = 6.0
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 251 GRSGSFASAEGQTPGKSRIPVIKEHHTNCNLN 346
GRSGS + +TPG R+ +E +C N
Sbjct: 217 GRSGSLKGSSSKTPGSERL--TRERSESCGRN 246
>03_02_0432 + 8392291-8392854
Length = 187
Score = 26.6 bits (56), Expect = 6.0
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +2
Query: 185 GLTTPNG-GSSRPRTPTGLLTPSGRSGSFASAEGQTPGKSRIPVIKEHHTNCNLNR 349
G+T+ +G G R+P LL + S + A+AEG G S ++ C R
Sbjct: 53 GITSVSGRGREGDRSPRQLLVRTPASPARATAEGGEDGGSTAGMVVRRQWRCGRKR 108
>01_07_0176 - 41733845-41734834,41736058-41736588
Length = 506
Score = 26.6 bits (56), Expect = 6.0
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Frame = +2
Query: 218 PRTPTG---LLTPSGRSGSFASAEGQTPGKSRIPV 313
PR+P+G +P G GS A+A TPG + IPV
Sbjct: 74 PRSPSGGASASSPRGAGGSAAAAAAATPG-AVIPV 107
>09_04_0182 + 15376025-15376498
Length = 157
Score = 26.2 bits (55), Expect = 7.9
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 17 GSRPGSRAGSKPPSRHGSNLSLDSTDDAGTPS 112
GSR GS AGS S GS L + +G+ S
Sbjct: 120 GSRTGSSAGSSAGSSGGSGLGIGFGQGSGSGS 151
>04_03_0073 - 10702352-10702619,10702702-10702836,10702915-10703594
Length = 360
Score = 26.2 bits (55), Expect = 7.9
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 5 EARPGSRPGSRAGSKPPSRHGSNLSLDSTDD 97
E R +RP + G +PP RH S S D
Sbjct: 17 EIRVTARPTTAPGGRPPKRHASAPSARPAQD 47
>03_05_0890 -
28547462-28547545,28548451-28548528,28548641-28548814,
28548902-28548958,28549065-28549116,28549907-28549995,
28550259-28550344,28550427-28550637,28551790-28551882,
28551958-28552098,28552175-28552267,28553879-28554113,
28554263-28554435,28555234-28556571,28556668-28556853,
28557625-28557713,28557756-28557905,28557951-28558596
Length = 1324
Score = 26.2 bits (55), Expect = 7.9
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +2
Query: 191 TTPNGGSSRPRTPTGLLTPSGRSGSFASAEGQTPGKSR 304
++P GS+ PRTPT +G + +S+ K +
Sbjct: 18 SSPTDGSNSPRTPTSAPPAAGSPAAASSSSSSRSDKKK 55
>01_06_1023 +
33890733-33891034,33891171-33891258,33894253-33894522,
33894616-33894724,33894833-33894950,33895051-33895183,
33895306-33895493,33895566-33895752,33895797-33895841,
33895850-33895917,33896093-33896186,33896284-33896475,
33896656-33896736,33897363-33897425
Length = 645
Score = 26.2 bits (55), Expect = 7.9
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -3
Query: 300 LFPGVCPSAEANDPLLPLGVRSPVGVRGRDD 208
L G+C +A A+ PLLP V G+ +
Sbjct: 10 LIGGICAAAAASSPLLPAAETMRVSFAGKSE 40
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,029,001
Number of Sequences: 37544
Number of extensions: 262988
Number of successful extensions: 986
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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