Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_E23
         (365 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   1.5  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   1.5  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   1.5  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   2.6  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   2.6  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   4.6  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   4.6  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   6.0  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   6.0  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   6.0  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   6.0  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 108 GVPASSVLSRDRFDPCLE 55
           G+P S +  RDR++ C+E
Sbjct: 57  GIPVSCISGRDRYE-CIE 73


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 108 GVPASSVLSRDRFDPCLE 55
           G+P S +  RDR++ C+E
Sbjct: 57  GIPVSCISGRDRYE-CIE 73


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 108 GVPASSVLSRDRFDPCLE 55
           G+P S +  RDR++ C+E
Sbjct: 57  GIPVSCISGRDRYE-CIE 73


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +2

Query: 323 HHTNCNLNRQ 352
           HH NC +NR+
Sbjct: 401 HHPNCKINRK 410


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = +2

Query: 20  SRPGSRAGSKPPSRHGSNLSLDSTDDAGTPSRIPMRKV 133
           S  G+ A  +PP+   SN     ++   TP+ +   K+
Sbjct: 263 SDSGAAASDRPPASASSNEHEAESEHTSTPNFLSEAKI 300


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +1

Query: 100 GNTISHTNEESDKY 141
           G T+S+TN++ + Y
Sbjct: 6   GKTVSYTNKKDESY 19


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 6/17 (35%), Positives = 9/17 (52%)
 Frame = -1

Query: 245 VSGVRWVCVGVMTLRWV 195
           V  +RW   G + L W+
Sbjct: 169 VGNIRWELAGTLLLVWI 185


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 6.0
 Identities = 5/13 (38%), Positives = 9/13 (69%)
 Frame = +3

Query: 81  WIAQMMREHHLAY 119
           W+ Q+  +HHL +
Sbjct: 57  WVTQIWTDHHLKW 69


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 6.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 17  GSRPGSRAGSKPPSRH 64
           G RP S    +PP++H
Sbjct: 108 GKRPASPGYVQPPTKH 123


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 20.6 bits (41), Expect = 6.0
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -1

Query: 74  DLIHVLKEASIQLLILA 24
           + +H+LK A  QLL+++
Sbjct: 392 EAMHMLKNADSQLLVIS 408


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 20.6 bits (41), Expect = 6.0
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +3

Query: 258 VGRSPRRKDKHLGRAVSQSLRNTIL 332
           + R+ +   K  GRA+S+ ++ T+L
Sbjct: 449 IARAVKFTSKLFGRALSRRIKATVL 473


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,862
Number of Sequences: 438
Number of extensions: 2273
Number of successful extensions: 16
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8680350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)