Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_E20
(509 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC008207-1|AAH08207.1| 494|Homo sapiens hypothetical protein BC... 31 3.1
BC095397-1|AAH95397.1| 496|Homo sapiens staufen, RNA binding pr... 29 7.1
BC050432-1|AAH50432.1| 577|Homo sapiens staufen, RNA binding pr... 29 7.1
AY546099-1|AAS76637.1| 502|Homo sapiens staufen protein T4 vari... 29 7.1
AY529074-1|AAS76636.1| 502|Homo sapiens staufen protein T5 vari... 29 7.1
AL133174-8|CAC14085.1| 577|Homo sapiens staufen, RNA binding pr... 29 7.1
AL133174-5|CAI42819.1| 494|Homo sapiens staufen, RNA binding pr... 29 7.1
AL133174-4|CAI42820.1| 502|Homo sapiens staufen, RNA binding pr... 29 7.1
AL133174-3|CAC14084.1| 496|Homo sapiens staufen, RNA binding pr... 29 7.1
AJ132258-1|CAB40082.1| 496|Homo sapiens staufen protein protein. 29 7.1
AF061941-1|AAD17533.1| 496|Homo sapiens staufen protein protein. 29 7.1
AF061940-1|AAD17532.1| 496|Homo sapiens staufen protein protein. 29 7.1
AF061939-1|AAD17531.1| 577|Homo sapiens staufen protein protein. 29 7.1
AF061938-1|AAD17530.1| 496|Homo sapiens staufen protein protein. 29 7.1
AB209561-1|BAD92798.1| 591|Homo sapiens staufen isoform b varia... 29 7.1
>BC008207-1|AAH08207.1| 494|Homo sapiens hypothetical protein
BC008207 protein.
Length = 494
Score = 30.7 bits (66), Expect = 3.1
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +1
Query: 391 VSSGDEFEESSKGAKPEPVKVNGELGLDDLPPIEDLAI 504
+S GD+ + K K P+K EL L++LP +E+L I
Sbjct: 153 LSDGDDDLQVEKENKNFPLKTKDELLLNELPSVEELTI 190
>BC095397-1|AAH95397.1| 496|Homo sapiens staufen, RNA binding
protein, homolog 1 (Drosophila) protein.
Length = 496
Score = 29.5 bits (63), Expect = 7.1
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 169 SEMVLKNNIINA-CAHGPLSRPKSESEDVTR 258
+E +LKNNI + HGPL+RP + + ++R
Sbjct: 387 AETILKNNISSGHVPHGPLTRPSEQLDYLSR 417
>BC050432-1|AAH50432.1| 577|Homo sapiens staufen, RNA binding
protein, homolog 1 (Drosophila) protein.
Length = 577
Score = 29.5 bits (63), Expect = 7.1
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 169 SEMVLKNNIINA-CAHGPLSRPKSESEDVTR 258
+E +LKNNI + HGPL+RP + + ++R
Sbjct: 468 AETILKNNISSGHVPHGPLTRPSEQLDYLSR 498
>AY546099-1|AAS76637.1| 502|Homo sapiens staufen protein T4 variant
protein.
Length = 502
Score = 29.5 bits (63), Expect = 7.1
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 169 SEMVLKNNIINA-CAHGPLSRPKSESEDVTR 258
+E +LKNNI + HGPL+RP + + ++R
Sbjct: 393 AETILKNNISSGHVPHGPLTRPSEQLDYLSR 423
>AY529074-1|AAS76636.1| 502|Homo sapiens staufen protein T5 variant
protein.
Length = 502
Score = 29.5 bits (63), Expect = 7.1
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 169 SEMVLKNNIINA-CAHGPLSRPKSESEDVTR 258
+E +LKNNI + HGPL+RP + + ++R
Sbjct: 393 AETILKNNISSGHVPHGPLTRPSEQLDYLSR 423
>AL133174-8|CAC14085.1| 577|Homo sapiens staufen, RNA binding
protein, homolog 1 (Drosophila) protein.
Length = 577
Score = 29.5 bits (63), Expect = 7.1
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 169 SEMVLKNNIINA-CAHGPLSRPKSESEDVTR 258
+E +LKNNI + HGPL+RP + + ++R
Sbjct: 468 AETILKNNISSGHVPHGPLTRPSEQLDYLSR 498
>AL133174-5|CAI42819.1| 494|Homo sapiens staufen, RNA binding
protein, homolog 1 (Drosophila) protein.
Length = 494
Score = 29.5 bits (63), Expect = 7.1
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 169 SEMVLKNNIINA-CAHGPLSRPKSESEDVTR 258
+E +LKNNI + HGPL+RP + + ++R
Sbjct: 385 AETILKNNISSGHVPHGPLTRPSEQLDYLSR 415
>AL133174-4|CAI42820.1| 502|Homo sapiens staufen, RNA binding
protein, homolog 1 (Drosophila) protein.
Length = 502
Score = 29.5 bits (63), Expect = 7.1
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 169 SEMVLKNNIINA-CAHGPLSRPKSESEDVTR 258
+E +LKNNI + HGPL+RP + + ++R
Sbjct: 393 AETILKNNISSGHVPHGPLTRPSEQLDYLSR 423
>AL133174-3|CAC14084.1| 496|Homo sapiens staufen, RNA binding
protein, homolog 1 (Drosophila) protein.
Length = 496
Score = 29.5 bits (63), Expect = 7.1
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 169 SEMVLKNNIINA-CAHGPLSRPKSESEDVTR 258
+E +LKNNI + HGPL+RP + + ++R
Sbjct: 387 AETILKNNISSGHVPHGPLTRPSEQLDYLSR 417
>AJ132258-1|CAB40082.1| 496|Homo sapiens staufen protein protein.
Length = 496
Score = 29.5 bits (63), Expect = 7.1
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 169 SEMVLKNNIINA-CAHGPLSRPKSESEDVTR 258
+E +LKNNI + HGPL+RP + + ++R
Sbjct: 387 AETILKNNISSGHVPHGPLTRPSEQLDYLSR 417
>AF061941-1|AAD17533.1| 496|Homo sapiens staufen protein protein.
Length = 496
Score = 29.5 bits (63), Expect = 7.1
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 169 SEMVLKNNIINA-CAHGPLSRPKSESEDVTR 258
+E +LKNNI + HGPL+RP + + ++R
Sbjct: 387 AETILKNNISSGHVPHGPLTRPSEQLDYLSR 417
>AF061940-1|AAD17532.1| 496|Homo sapiens staufen protein protein.
Length = 496
Score = 29.5 bits (63), Expect = 7.1
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 169 SEMVLKNNIINA-CAHGPLSRPKSESEDVTR 258
+E +LKNNI + HGPL+RP + + ++R
Sbjct: 387 AETILKNNISSGHVPHGPLTRPSEQLDYLSR 417
>AF061939-1|AAD17531.1| 577|Homo sapiens staufen protein protein.
Length = 577
Score = 29.5 bits (63), Expect = 7.1
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 169 SEMVLKNNIINA-CAHGPLSRPKSESEDVTR 258
+E +LKNNI + HGPL+RP + + ++R
Sbjct: 468 AETILKNNISSGHVPHGPLTRPSEQLDYLSR 498
>AF061938-1|AAD17530.1| 496|Homo sapiens staufen protein protein.
Length = 496
Score = 29.5 bits (63), Expect = 7.1
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 169 SEMVLKNNIINA-CAHGPLSRPKSESEDVTR 258
+E +LKNNI + HGPL+RP + + ++R
Sbjct: 387 AETILKNNISSGHVPHGPLTRPSEQLDYLSR 417
>AB209561-1|BAD92798.1| 591|Homo sapiens staufen isoform b variant
protein.
Length = 591
Score = 29.5 bits (63), Expect = 7.1
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 169 SEMVLKNNIINA-CAHGPLSRPKSESEDVTR 258
+E +LKNNI + HGPL+RP + + ++R
Sbjct: 482 AETILKNNISSGHVPHGPLTRPSEQLDYLSR 512
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.309 0.130 0.361
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,753,384
Number of Sequences: 237096
Number of extensions: 1460593
Number of successful extensions: 6014
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 5921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6014
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4763295768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
- SilkBase 1999-2023 -