Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_E20
         (509 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70307-12|CAA94340.1|  405|Caenorhabditis elegans Hypothetical p...    29   2.6  
U53333-12|AAA96165.1|  387|Caenorhabditis elegans Nuclear hormon...    29   2.6  
U28991-13|AAA68387.1|  281|Caenorhabditis elegans Hypothetical p...    29   2.6  
Z71181-3|CAA94896.1|  493|Caenorhabditis elegans Hypothetical pr...    28   3.4  
U28991-14|AAA68388.1|  352|Caenorhabditis elegans Hypothetical p...    28   3.4  
U28929-1|AAN63410.1|  418|Caenorhabditis elegans Hypothetical pr...    28   3.4  
Z50176-2|CAA90539.1| 1115|Caenorhabditis elegans Hypothetical pr...    28   4.5  
U49831-8|AAA93409.2|  280|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AF067222-3|AAC17019.1|  292|Caenorhabditis elegans Hypothetical ...    27   7.9  

>Z70307-12|CAA94340.1|  405|Caenorhabditis elegans Hypothetical
           protein C39E9.11 protein.
          Length = 405

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = +1

Query: 82  IADYGGSDSESDTETRSNTTGNDSDAPELSEMVLKNNIINACAHGPLSRPKSESEDVTRH 261
           + DY GS+SESD E    T   +S AP+  ++V      +       S P    EDV   
Sbjct: 3   LVDYAGSESESDEE--METQQKNSLAPQNQQLVDDEAFFDNTEKS--SSPNMNKEDVLEE 58

Query: 262 MI 267
           ++
Sbjct: 59  LV 60


>U53333-12|AAA96165.1|  387|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 78 protein.
          Length = 387

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -1

Query: 278 QLSIII-CLVTSSLSDFGRDKGPWAQAFIILFFKTISLS 165
           Q S+++ CL+   +  +G ++GP     IILF  +IS+S
Sbjct: 329 QKSLLVQCLLKFCIDTYGEEEGPARAGNIILFSSSISVS 367


>U28991-13|AAA68387.1|  281|Caenorhabditis elegans Hypothetical
           protein F08F8.5 protein.
          Length = 281

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = +1

Query: 31  KMANTDQINNKNVSLSLIADYGGSDSESDTETRSNTTGNDSDAPELS 171
           KMAN D     + S+ +IAD   SDS SD+    +     +DAPE++
Sbjct: 74  KMANRD-----SASIFVIADSDSSDSSSDSSDSGDEDVIIADAPEVA 115


>Z71181-3|CAA94896.1|  493|Caenorhabditis elegans Hypothetical
           protein K07C5.3 protein.
          Length = 493

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
 Frame = +1

Query: 22  KVPKMANTDQINNKNVSLSLIADYGGSDSESDTETRSNTTGNDS-DAPELS-----EMVL 183
           K  K          +V +S     G  DS+S ++     +G+DS D  E+S     E   
Sbjct: 376 KKSKRQEESDDEESDVEMSNSESEGDQDSDSGSDNEEEISGSDSDDVSEISSDDEEESSF 435

Query: 184 KNNIINACAHGPLSRPKSESEDV 252
           K N     A G  +RP+    ++
Sbjct: 436 KENSPKKVARGTRTRPRGNDGNI 458


>U28991-14|AAA68388.1|  352|Caenorhabditis elegans Hypothetical
           protein F08F8.1 protein.
          Length = 352

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 55  NNKNVSLSLIADYGGSDSESDTETRSNTTGNDSDAPELS 171
           N  + S+ +IAD   SDS SD+    +     +DAPE++
Sbjct: 3   NRDSASIFVIADSDSSDSSSDSSDSGDEDVIIADAPEVA 41


>U28929-1|AAN63410.1|  418|Caenorhabditis elegans Hypothetical
           protein F09C12.2 protein.
          Length = 418

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 17/41 (41%), Positives = 25/41 (60%)
 Frame = +1

Query: 58  NKNVSLSLIADYGGSDSESDTETRSNTTGNDSDAPELSEMV 180
           N++ SL  IAD+G S S   T+T  NT+ N   + +LS+ V
Sbjct: 178 NEDCSLK-IADFGMSRSGPSTKTTPNTSPNAHISGDLSQYV 217


>Z50176-2|CAA90539.1| 1115|Caenorhabditis elegans Hypothetical
           protein C09G1.2 protein.
          Length = 1115

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 373 VKDIEEVSSGDEFEESSKGAKPEPVKVNGELGL 471
           + DIEE+    E +  SK    EP+  N ++ L
Sbjct: 91  IPDIEEMKESKELDSISKSTNMEPISCNSKIKL 123


>U49831-8|AAA93409.2|  280|Caenorhabditis elegans Hypothetical
           protein F10C1.5 protein.
          Length = 280

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 18/63 (28%), Positives = 24/63 (38%)
 Frame = +1

Query: 55  NNKNVSLSLIADYGGSDSESDTETRSNTTGNDSDAPELSEMVLKNNIINACAHGPLSRPK 234
           NN N +     D  G  S   + T S T  + S  PELS     N   +     P+ +P 
Sbjct: 127 NNNNNTEEKYEDSQGQRSSPSSPTGSETVVSTSSPPELSSESTPNTSGSVIPTSPVFKPN 186

Query: 235 SES 243
             S
Sbjct: 187 GYS 189


>AF067222-3|AAC17019.1|  292|Caenorhabditis elegans Hypothetical
           protein H11E01.1 protein.
          Length = 292

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +1

Query: 217 PLSRPKSESEDVTRHMIIDNCESGIVEYE 303
           P++   + ++D+    +I+NC SG++ YE
Sbjct: 137 PVTWFSASTDDIHLQKLINNCSSGLLSYE 165


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.309    0.130    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,252,603
Number of Sequences: 27780
Number of extensions: 233835
Number of successful extensions: 583
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)