Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_E20
         (509 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   3.2  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   4.2  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    21   7.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.8  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +1

Query: 88  DYGGSDSESDTETRSNTTGNDSDAPE 165
           DYG  D+ +D   ++     D+D  E
Sbjct: 120 DYGNQDNRNDRRKKTFAAREDNDEEE 145


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +1

Query: 64  NVSLSLIADYGGSDSESDTETRSNTTGNDSDAPELSEMVLKNNIINACAH 213
           NV+L   + Y GS +E      ++ T +  +  ELS++   N  IN   H
Sbjct: 364 NVTLPT-STYSGSPTELPKHLPTSLTKSKMEVMELSDLHHPNCKINRKVH 412


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = +1

Query: 52  INNKNVSLSLIADYGGSDSESDTETRSNTTGNDS-DAPE 165
           INN   S  +     G   + D ET   + G+DS  AP+
Sbjct: 43  INNFETSNGISHQESGQPKQVDNETPVVSQGSDSYTAPD 81


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 254  VTSSLSDFGRDKGPW 210
            +TSS SD G   G W
Sbjct: 1066 ITSSGSDSGSSNGSW 1080


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.309    0.130    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,621
Number of Sequences: 438
Number of extensions: 2793
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.2 bits)