Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_E19
         (429 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-tr...   198   3e-52
SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans i...   166   1e-42
SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-tr...   150   8e-38
SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans...   142   2e-35
SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans...   120   1e-28
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    93   2e-20
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran...    88   6e-19
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-...    77   2e-15
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    46   2e-06
SPAC1B3.01c |||uracil phosphoribosyltransferase |Schizosaccharom...    26   2.2  
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch...    25   5.0  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    25   5.0  
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    25   6.6  
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    24   8.7  
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    24   8.7  

>SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 162

 Score =  198 bits (483), Expect = 3e-52
 Identities = 91/111 (81%), Positives = 95/111 (85%)
 Frame = +3

Query: 96  FFDVTADGSPLGRIVVELRTDVTPKTCENFRALCTGEKGFGYKGSTFHRVIPNFMLQGGD 275
           FFDV A+G PLGRIV +L  DV PKT  NFRALCTGEKG+GY GSTFHRVIP FMLQGGD
Sbjct: 5   FFDVIANGQPLGRIVFKLFDDVVPKTAANFRALCTGEKGYGYAGSTFHRVIPQFMLQGGD 64

Query: 276 FTNHNGTGGKSIYGEKFGDENFVLKHTGPGVLSMANAGPNTNGSQFFITTV 428
           FT  NGTGGKSIYGEKF DENF LKH  PG+LSMANAGPNTNGSQFFITTV
Sbjct: 65  FTRGNGTGGKSIYGEKFPDENFALKHNKPGLLSMANAGPNTNGSQFFITTV 115


>SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 201

 Score =  166 bits (404), Expect = 1e-42
 Identities = 76/112 (67%), Positives = 87/112 (77%)
 Frame = +3

Query: 93  VFFDVTADGSPLGRIVVELRTDVTPKTCENFRALCTGEKGFGYKGSTFHRVIPNFMLQGG 272
           V+FD+      LGR+ + L     PKT ENFRAL TGEKGFGY+GS FHRVIPNFM+QGG
Sbjct: 29  VYFDLQQGDEFLGRVTIGLFGKTVPKTAENFRALATGEKGFGYEGSIFHRVIPNFMIQGG 88

Query: 273 DFTNHNGTGGKSIYGEKFGDENFVLKHTGPGVLSMANAGPNTNGSQFFITTV 428
           D T  +GTGGKSIYG +F DENF L H  PG+LSMANAGP++NGSQFFITTV
Sbjct: 89  DITKGDGTGGKSIYGSRFPDENFKLSHQRPGLLSMANAGPDSNGSQFFITTV 140


>SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-trans
           isomerase Wis2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score =  150 bits (364), Expect = 8e-38
 Identities = 75/115 (65%), Positives = 84/115 (73%), Gaps = 4/115 (3%)
 Frame = +3

Query: 96  FFDVTADGSPLGRIVVELRTDVTPKTCENFRALCTGEKGFG----YKGSTFHRVIPNFML 263
           +F ++ DG     I  EL  +V PKT +NF +LC G +  G    YKGS FHRVI NFML
Sbjct: 6   YFKISIDGKIQPTIYFELFDNVVPKTVKNFASLCNGFEKDGRCLTYKGSRFHRVIKNFML 65

Query: 264 QGGDFTNHNGTGGKSIYGEKFGDENFVLKHTGPGVLSMANAGPNTNGSQFFITTV 428
           QGGDFT  NGTGG+SIYGEKF DENF LKH  P +LSMANAGPNTNGSQFFITTV
Sbjct: 66  QGGDFTRGNGTGGESIYGEKFEDENFELKHDKPFLLSMANAGPNTNGSQFFITTV 120


>SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp3 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score =  142 bits (344), Expect = 2e-35
 Identities = 69/121 (57%), Positives = 83/121 (68%), Gaps = 7/121 (5%)
 Frame = +3

Query: 87  PRVFFDVTADGSPLGRIVVELRTDVTPKTCENFRALCTGE------KGFGYKGSTFHRVI 248
           P VF D+  DG  LGRI + L + + PKT ENFR  CTGE      K  GYK STFHR+I
Sbjct: 5   PVVFMDIAIDGRLLGRIKIRLFSSIVPKTAENFRQFCTGETLGVNQKPIGYKNSTFHRII 64

Query: 249 PNFMLQGGDFTNHNGTGGKSIYGEK-FGDENFVLKHTGPGVLSMANAGPNTNGSQFFITT 425
             FM+QGGDF + +GTG  +I+  + F DENF LKH  PG+LSMANAG ++NG QFFITT
Sbjct: 65  QGFMIQGGDFVSGDGTGSATIFNSRTFPDENFTLKHDRPGLLSMANAGKDSNGCQFFITT 124

Query: 426 V 428
           V
Sbjct: 125 V 125


>SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score =  120 bits (288), Expect = 1e-28
 Identities = 61/100 (61%), Positives = 75/100 (75%), Gaps = 1/100 (1%)
 Frame = +3

Query: 126 LGRIVVELRTDVTPKTCENFRALCTGEKGFGYKGSTFHRVIPNFMLQGGDFTNHNGTGGK 305
           LG+I++EL T+  PKTC+NF  L   ++G+ Y G  FHRVIP+F++QGGD T   G GG 
Sbjct: 10  LGKILIELYTEHAPKTCQNFYTLA--KEGY-YDGVIFHRVIPDFVIQGGDPTG-TGRGGT 65

Query: 306 SIYGEKFGDE-NFVLKHTGPGVLSMANAGPNTNGSQFFIT 422
           SIYG+KF DE +  L HTG G+LSMANAGPNTN SQFFIT
Sbjct: 66  SIYGDKFDDEIHSDLHHTGAGILSMANAGPNTNSSQFFIT 105


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 93.1 bits (221), Expect = 2e-20
 Identities = 51/100 (51%), Positives = 66/100 (66%), Gaps = 1/100 (1%)
 Frame = +3

Query: 129 GRIVVELRTDVTPKTCENFRALCTGEKGFGYKGSTFHRVIPNFMLQGGDFTNHNGTGGKS 308
           G I ++L  +  PK  +NF      E G+ Y  + FHR+I NFM+QGGD    +GTGG+S
Sbjct: 464 GDISIKLYPEEAPKAVQNFTT--HAENGY-YDNTIFHRIIKNFMIQGGDPLG-DGTGGES 519

Query: 309 IYGEKFGDE-NFVLKHTGPGVLSMANAGPNTNGSQFFITT 425
           I+ + F DE +  LKH  P  +SMAN+GPNTNGSQFFITT
Sbjct: 520 IWKKDFEDEISPNLKHDRPFTVSMANSGPNTNGSQFFITT 559


>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 516

 Score = 87.8 bits (208), Expect = 6e-19
 Identities = 49/98 (50%), Positives = 62/98 (63%), Gaps = 1/98 (1%)
 Frame = +3

Query: 129 GRIVVELRTDVTPKTCENFRALCTGEKGFGYKGSTFHRVIPNFMLQGGDFTNHNGTGGKS 308
           G I +EL TD  P    NF  L   ++G+ Y+ + FHR I  FM+QGGD  +  G GG+S
Sbjct: 285 GEINIELHTDYAPHAVYNFVQLA--KQGY-YRNTIFHRNIARFMIQGGD-PSGTGRGGQS 340

Query: 309 IYGEKFGDENF-VLKHTGPGVLSMANAGPNTNGSQFFI 419
           I+G+ F DE    LKH   G++SMAN G NTNGSQFFI
Sbjct: 341 IWGKPFKDEFCNPLKHDDRGIISMANRGKNTNGSQFFI 378


>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
           cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 76.6 bits (180), Expect = 2e-15
 Identities = 45/99 (45%), Positives = 56/99 (56%), Gaps = 1/99 (1%)
 Frame = +3

Query: 129 GRIVVELRTDVTPKTCENFRALCTGEKGFGYKGSTFHRVIPNFMLQGGDFTNHNGTGGKS 308
           G I +EL     PK C NF  LC   +G+ Y G+  HRV+P F++QGGD T   G GG+S
Sbjct: 22  GDIQIELWCKEVPKACRNFIQLCL--EGY-YDGTIVHRVVPEFLIQGGDPTG-TGMGGES 77

Query: 309 IYGEKFGDENFV-LKHTGPGVLSMANAGPNTNGSQFFIT 422
           IYGE F  E    L+    G++ MA      N SQFFIT
Sbjct: 78  IYGEPFAVETHPRLRFIRRGLVGMACTENEGNNSQFFIT 116


>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 46.4 bits (105), Expect = 2e-06
 Identities = 37/113 (32%), Positives = 54/113 (47%), Gaps = 14/113 (12%)
 Frame = +3

Query: 126 LGRIVVELRTDVTPKTCENFRALCTGEKGFGYKGSTFHRVIPNFMLQGGDFTNHNGTGGK 305
           +G +V++L     PKTCENF  LC   K   Y    F+ +  N+  Q GD     G GG+
Sbjct: 9   VGDLVIDLFVKEAPKTCENFLKLC---KLKYYNFCPFYNIQHNYTCQTGDPLGPTGDGGR 65

Query: 306 SIY-----GEKF--GDENFVLKHTGPGVLSMANAGPNTN-------GSQFFIT 422
            ++     G +F   + N  L H   G++SM+ A  ++        GSQF IT
Sbjct: 66  CVWNVLNKGTRFFKAEFNPSLVHNKMGLVSMSTATISSRDDKLLVCGSQFIIT 118


>SPAC1B3.01c |||uracil phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 219

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 22/85 (25%), Positives = 38/85 (44%)
 Frame = -2

Query: 419 NEELRTIGVRTRISHREHSRSSMLQDEVLIAELLAVDGLSTGTIVVCKVTTLQHEVGDDT 240
           N+  +  G+ T I  +   RS  +     I  L+  +GL+   +   KVTT Q+   +  
Sbjct: 14  NQTNQLKGLFTIIRDKTKPRSEFIFYANRIIRLIVEEGLNHLPVSSAKVTTAQNAEYEGV 73

Query: 239 VESGAFVAEALLASTESSEVFTGLR 165
           +  G     +++ + ES E   GLR
Sbjct: 74  MFDGRICGVSIMRAGESME--QGLR 96


>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 679

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -2

Query: 314 VDGLSTGTIVVCKVTTLQHEVGDDTVESGAF-VAEALLASTESSEV 180
           V+ +    IVV KVT   HE   D+V +    V+  L   T SS+V
Sbjct: 620 VEMVERNGIVVPKVTVTSHEDDVDSVHNTPMSVSSTLSVKTSSSKV 665


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
 Frame = -3

Query: 298 PVPLWFVKSPPCS------MKLGMTRWKVEPL*PKPFSPVQRARKFSQVLGVTSVLSSTT 137
           PV LW    P CS      M+LG +   +E L P+ ++P       + V+ +   ++  T
Sbjct: 616 PVVLWLNGGPGCSSLTGLFMELGPSSINIETLKPE-YNP-HSWNSNASVIFLDQPIN--T 671

Query: 136 ILPNGDPSAVTSKKTRGKDILVY 68
              NGD S V    T GKD+  +
Sbjct: 672 GFSNGDDS-VLDTVTAGKDVYAF 693


>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 183 FRALCTGEKGFGYKGSTFHRVIP 251
           F A+C  EKG  Y    FH  +P
Sbjct: 419 FDAICLLEKGITYSQHNFHLKLP 441


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 3   TRRRNTHRHCGSV*CSFLVVC**TKMSLPR 92
           TRRR   R CG V C F V+    ++SLP+
Sbjct: 291 TRRRRHCRLCGRVICRFCVL----EISLPQ 316


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 233 SGAFVAEALLASTESSEVFTGLRSDVSS 150
           SGA V+ A  AST+ S   +   S VSS
Sbjct: 238 SGAIVSNAKTASTDDSSSASSATSSVSS 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,804,378
Number of Sequences: 5004
Number of extensions: 36549
Number of successful extensions: 125
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)