Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_E18
(334 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc... 143 7e-36
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa... 143 7e-36
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz... 42 2e-05
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ... 25 2.3
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 25 2.3
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch... 24 5.3
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo... 24 5.3
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 24 7.0
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1... 24 7.0
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch... 24 7.0
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 24 7.0
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb... 23 9.2
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual 23 9.2
SPAC30C2.05 |erv14||cornichon family protein Erv14|Schizosacchar... 23 9.2
>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
S16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 140
Score = 143 bits (346), Expect = 7e-36
Identities = 64/99 (64%), Positives = 84/99 (84%)
Frame = +2
Query: 38 IQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGV 217
+Q+VQ FG+K ATAVA+CK G G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+GV
Sbjct: 1 MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60
Query: 218 DIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASK 334
DIRV V GGGHV+Q+YAIRQAISKA++A+YQK+VDE SK
Sbjct: 61 DIRVRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSK 99
>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
S16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 140
Score = 143 bits (346), Expect = 7e-36
Identities = 64/99 (64%), Positives = 84/99 (84%)
Frame = +2
Query: 38 IQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGV 217
+Q+VQ FG+K ATAVA+CK G G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+GV
Sbjct: 1 MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60
Query: 218 DIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASK 334
DIRV V GGGHV+Q+YAIRQAISKA++A+YQK+VDE SK
Sbjct: 61 DIRVRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSK 99
>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
S9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 132
Score = 42.3 bits (95), Expect = 2e-05
Identities = 26/80 (32%), Positives = 39/80 (48%)
Frame = +2
Query: 59 GRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVDIRVTVK 238
G++K++ A G G VNG P D+ R++ K L + + ++ TV
Sbjct: 12 GKRKSSKATVKMLPGTGKFYVNGSPFDVYFQRMVHRK-HAVYPLAACNRLTNYNVWATVH 70
Query: 239 GGGHVAQVYAIRQAISKALI 298
GGG Q A+ AISK+LI
Sbjct: 71 GGGPTGQSGAVHAAISKSLI 90
>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 25.4 bits (53), Expect = 2.3
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -2
Query: 123 FTRNTPCPRLQYA-TAVAVFLRPKTCTAWIGS 31
+T+N PCPR ++ T P T +WI S
Sbjct: 341 YTQNIPCPRAGHSHTYELAPASPNTSISWIQS 372
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 25.4 bits (53), Expect = 2.3
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = -2
Query: 261 TCATCPPPFTVTLISTP 211
T +CPPP T+ +++ P
Sbjct: 184 TSTSCPPPTTILIVTVP 200
>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 681
Score = 24.2 bits (50), Expect = 5.3
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -1
Query: 331 RCFVYIFLVESDKGFRDGLSDCINLCNMSTTFYSHSNIH 215
+C V + V+ +KG R LS I N+ +T N H
Sbjct: 318 KCLVSLLFVDGEKGLRSELSQ-IPTENIDSTTDRFDNYH 355
>SPAC637.11 |suv3||ATP-dependent RNA helicase
Suv3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 24.2 bits (50), Expect = 5.3
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -1
Query: 307 VESDKGFRDGLSDCINLCNMSTTF 236
+ +D F +S + +CN+STTF
Sbjct: 231 IRNDYPFPQVVSCTVEMCNLSTTF 254
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2244
Score = 23.8 bits (49), Expect = 7.0
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -1
Query: 286 RDGLSDCINLCNMSTTFYSHSNIHT 212
RD +CI +CNM + IHT
Sbjct: 685 RDAFDNCITVCNMEN--FDPLGIHT 707
>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
Epe1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 948
Score = 23.8 bits (49), Expect = 7.0
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = -1
Query: 316 IFLVESDKGFRDGLSDCINLCNMSTTFYS--HSNIHTREL 203
+F D+GFR S C N N+ T S ++IH EL
Sbjct: 705 LFTTWGDQGFRPSDSICYNDFNLLETANSDAEASIHELEL 744
>SPBC215.08c |arg4||carbamoyl-phosphate synthase
Arg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1160
Score = 23.8 bits (49), Expect = 7.0
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -1
Query: 286 RDGLSDCINLCNMSTTFYSHSNIHT 212
RD ++CI +CNM + IHT
Sbjct: 299 RDAANNCITVCNMEN--FDPLGIHT 321
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 23.8 bits (49), Expect = 7.0
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -2
Query: 123 FTRNTPCPRLQYATAVAVFLRPKTCTAWIGSRLASC 16
F+R+ C ++ A +V RPK TA I + C
Sbjct: 748 FSRSMDCDSIKNALSVVSSTRPKNTTAVIDVDSSFC 783
>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 406
Score = 23.4 bits (48), Expect = 9.2
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -3
Query: 212 QRTFPCLAKG*VPVVCTEEVWVL 144
Q T ++ VP+VC WVL
Sbjct: 213 QETLKKISSAQVPIVCVSPKWVL 235
>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 304
Score = 23.4 bits (48), Expect = 9.2
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +3
Query: 156 FFSTNYRNLSFC*ARKSSLVW 218
F STN+++ S + KS+L+W
Sbjct: 79 FLSTNFQDCSTLPSVKSTLIW 99
>SPAC30C2.05 |erv14||cornichon family protein
Erv14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 141
Score = 23.4 bits (48), Expect = 9.2
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 137 DLVEPRLLQYKLQEPILLLGKE 202
DLV P ++ + L +LLLGK+
Sbjct: 53 DLVMPEIISHTLVTLLLLLGKK 74
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,530,538
Number of Sequences: 5004
Number of extensions: 30687
Number of successful extensions: 99
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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