Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_E17
         (373 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr 1|||Ma...    46   1e-06
SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce...    31   0.044
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy...    27   0.94 
SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    26   2.2  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    25   3.8  
SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2 |Schizosacc...    24   6.7  
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo...    24   8.8  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    24   8.8  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    24   8.8  

>SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 127

 Score = 46.4 bits (105), Expect = 1e-06
 Identities = 21/51 (41%), Positives = 30/51 (58%)
 Frame = +3

Query: 9   RIIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGDYLITCGY 161
           R I  KL K G+ C+ T+  +++S Y E   P +AA + E L DYL+  GY
Sbjct: 77  RSIYGKLQKEGIICVATKLCILVSHYPETTLPGEAAKITEALADYLVGVGY 127


>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 469

 Score = 31.5 bits (68), Expect = 0.044
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 38  RRALHEDTASRRNFSL*RTHSTPAGRIRSRE 130
           +R+LH+ T S     L RT+S P   +RSRE
Sbjct: 426 KRSLHDSTTSHNKSDLMRTNSDPQSAMRSRE 456


>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 557

 Score = 27.1 bits (57), Expect = 0.94
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
 Frame = +2

Query: 80  SL*RTHSTPAGRIRSREVRRLFNYLWLLEIEMRRDLRILYKI--------IFFPQGNK*L 235
           SL  T  +P   +R   V +++  L  +  E +    I YK+        + FP+GNK  
Sbjct: 256 SLFWTPESPRYLLRHNHVEKVYKILSRIHPEAK-PAEIAYKVSLIQEGVKVDFPEGNKFQ 314

Query: 236 HFVYSMK 256
           HF +S+K
Sbjct: 315 HFFHSLK 321


>SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 340

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = -2

Query: 96  WVLHKEKLRRL-AVSSCNARRPCRALRV*YASC 1
           W+ ++E  ++L ++S+ + RRPCR   + + SC
Sbjct: 15  WICYEEYDKKLCSLSNDSWRRPCRCSLIAHESC 47


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -1

Query: 271 ERSLSLHRIYKMQLLISLWKK 209
           ERS  LHR+  ++LL+SL+ +
Sbjct: 182 ERSYELHRVEVLRLLLSLFSE 202


>SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = -1

Query: 289 NIKNKYERSLSLHRIYKMQLLISLWKKYYLIKYS*ITAHFD 167
           N+  K +  L  + +Y M  LIS W    L K   I   FD
Sbjct: 182 NLSRKLDNELERNLVYSMNDLISFWNTVKL-KQKEIQEMFD 221


>SPAC20G8.10c ||SPAC3A12.01c|beclin family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 464

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 325 LKLITRRCHKLSNIKNKYERSL 260
           ++ + +RCH L N K+ Y+  L
Sbjct: 1   MQYLCQRCHSLINFKDVYDDDL 22


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2310

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = +3

Query: 267 RSYLFLIFDNLWHRRVMSLSNCVTYV*SRLLCGFW 371
           +S LFL+  N W+ ++ +  + ++   S  +C +W
Sbjct: 825 KSCLFLLPRNFWNSKLYTRKDLISIHISLAMCYWW 859


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -1

Query: 73  TTACCVFMQCTPTLPSFARMIRL 5
           T  CC F QC   +  + R  RL
Sbjct: 334 TQDCCAFSQCLSKIADWLRSCRL 356


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,469,567
Number of Sequences: 5004
Number of extensions: 25579
Number of successful extensions: 78
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)