Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_E17
(373 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_05_0039 - 8461234-8461368,8461502-8461639,8461743-8461865 54 3e-08
10_05_0037 + 8451675-8451797,8451901-8452038,8452163-8452297 54 3e-08
06_01_0373 + 2689317-2689439,2690597-2690734,2691616-2691750 49 1e-06
03_01_0527 + 3960982-3961290,3961371-3961464,3961898-3962084,396... 28 2.7
02_01_0598 + 4440018-4440070,4440627-4440693,4440794-4440926,444... 27 4.7
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 27 6.2
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 27 6.2
08_02_1063 + 24024030-24024506,24024803-24024856,24024965-240251... 26 8.2
08_02_0681 + 20013975-20014298,20014391-20014594,20014790-20014828 26 8.2
>10_05_0039 - 8461234-8461368,8461502-8461639,8461743-8461865
Length = 131
Score = 54.4 bits (125), Expect = 3e-08
Identities = 24/49 (48%), Positives = 33/49 (67%)
Frame = +3
Query: 12 IIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGDYLITCG 158
+IR K G G+ KT QA+V+ +Y+EP+ P Q VVE+LGDYL+ G
Sbjct: 82 VIRGKKGSGGITVKKTGQALVVGIYDEPMTPGQCNMVVERLGDYLVEQG 130
>10_05_0037 + 8451675-8451797,8451901-8452038,8452163-8452297
Length = 131
Score = 54.4 bits (125), Expect = 3e-08
Identities = 24/49 (48%), Positives = 33/49 (67%)
Frame = +3
Query: 12 IIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGDYLITCG 158
+IR K G G+ KT QA+V+ +Y+EP+ P Q VVE+LGDYL+ G
Sbjct: 82 VIRGKKGSGGITVKKTGQALVVGIYDEPMTPGQCNMVVERLGDYLVEQG 130
>06_01_0373 + 2689317-2689439,2690597-2690734,2691616-2691750
Length = 131
Score = 48.8 bits (111), Expect = 1e-06
Identities = 21/49 (42%), Positives = 32/49 (65%)
Frame = +3
Query: 12 IIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGDYLITCG 158
+IR K G G+ KT ++++ +Y+EP+ P Q +VE+LGDYLI G
Sbjct: 82 VIRGKKGTGGICVKKTGLSLILGIYDEPMTPGQCNMIVERLGDYLIEQG 130
>03_01_0527 +
3960982-3961290,3961371-3961464,3961898-3962084,
3962194-3962449,3962561-3962773,3962856-3962942,
3963089-3963223,3963296-3963409,3963507-3963754,
3963824-3963904,3963979-3964210,3964340-3964438,
3964513-3964701,3964928-3965023
Length = 779
Score = 27.9 bits (59), Expect = 2.7
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -2
Query: 336 LHSCLNSSHDDAINYQISKTNMNGPYHFIEYTKCSY 229
L SCL + DDA + Q+ + YH +EY + +Y
Sbjct: 410 LDSCLITRSDDAPHLQMPRDLRLRSYHTLEYYRMTY 445
>02_01_0598 + 4440018-4440070,4440627-4440693,4440794-4440926,
4441075-4441120,4442470-4442521,4442601-4442753,
4443338-4443457,4443549-4443714,4443822-4443934,
4444049-4444120,4444992-4445213,4445270-4445317,
4445639-4445697,4445809-4445887,4445982-4446119,
4446327-4446551,4446643-4447430,4447548-4447723,
4447911-4448169,4448646-4448707,4451055-4451212,
4451618-4451743,4452197-4452260,4452386-4452494,
4452607-4452760,4453055-4453178,4453257-4453333,
4453442-4453494,4453673-4453727,4453833-4454021
Length = 1379
Score = 27.1 bits (57), Expect = 4.7
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +2
Query: 17 TRKARQGRRALHEDTASRRNFSL*RTHSTPAGRIRSR 127
+R RR+L D RN R+H AGR R R
Sbjct: 926 SRSRSPPRRSLERDREHNRNRDTDRSHGNDAGRERDR 962
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 26.6 bits (56), Expect = 6.2
Identities = 9/34 (26%), Positives = 18/34 (52%)
Frame = -2
Query: 330 SCLNSSHDDAINYQISKTNMNGPYHFIEYTKCSY 229
+C+ + H ++Y +++ NG +H E K Y
Sbjct: 253 ACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVY 286
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 26.6 bits (56), Expect = 6.2
Identities = 9/34 (26%), Positives = 18/34 (52%)
Frame = -2
Query: 330 SCLNSSHDDAINYQISKTNMNGPYHFIEYTKCSY 229
+C+ + H ++Y +++ NG +H E K Y
Sbjct: 253 ACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVY 286
>08_02_1063 +
24024030-24024506,24024803-24024856,24024965-24025118,
24025314-24025388,24025511-24025788,24026023-24026253,
24026522-24026620,24026740-24026889,24027830-24027976,
24028525-24028575,24028647-24028819,24029018-24029147,
24029361-24029458,24029655-24029892,24030634-24030837,
24031003-24031083,24031296-24031535
Length = 959
Score = 26.2 bits (55), Expect = 8.2
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 51 MKTQQAVVISLYEEPIQPQQAASVVEKLGDYLITCGY 161
+ T+ AVV ++ E+ + EKL + L TCGY
Sbjct: 187 LATEMAVVWAVPEDEDAKNWKLQLGEKLANQLTTCGY 223
>08_02_0681 + 20013975-20014298,20014391-20014594,20014790-20014828
Length = 188
Score = 26.2 bits (55), Expect = 8.2
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +3
Query: 6 RRIIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGDYLITCG 158
RR LG+V + + + V+ L + + P++ S+ EK+G L G
Sbjct: 119 RRRQEGGLGRVVLFALFSVCFAVVGLLLQELAPEEKGSIQEKVGSVLADIG 169
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,979,810
Number of Sequences: 37544
Number of extensions: 147175
Number of successful extensions: 363
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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