Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_E17
         (373 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55375-5|AAC69045.1|  126|Caenorhabditis elegans Profilin protei...    39   0.001
AY530910-1|AAT01435.1|  126|Caenorhabditis elegans profilin-3 pr...    39   0.001
U40941-2|AAA81708.3|  131|Caenorhabditis elegans Profilin protei...    34   0.028
AY530909-1|AAT01434.1|  131|Caenorhabditis elegans profilin-2 pr...    34   0.028
AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical ...    28   2.4  
Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z95559-15|CAB63361.1|  917|Caenorhabditis elegans Hypothetical p...    26   9.9  

>U55375-5|AAC69045.1|  126|Caenorhabditis elegans Profilin protein 3
           protein.
          Length = 126

 Score = 38.7 bits (86), Expect = 0.001
 Identities = 21/51 (41%), Positives = 28/51 (54%)
 Frame = +3

Query: 9   RIIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGDYLITCGY 161
           RII  K G  G    KT QAV+IS+YE+ +QP+  +     L DY  +  Y
Sbjct: 77  RII-GKQGGSGFFIYKTIQAVIISIYEKGLQPEMCSKTTGALADYFRSIKY 126


>AY530910-1|AAT01435.1|  126|Caenorhabditis elegans profilin-3
           protein.
          Length = 126

 Score = 38.7 bits (86), Expect = 0.001
 Identities = 21/51 (41%), Positives = 28/51 (54%)
 Frame = +3

Query: 9   RIIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGDYLITCGY 161
           RII  K G  G    KT QAV+IS+YE+ +QP+  +     L DY  +  Y
Sbjct: 77  RII-GKQGGSGFFIYKTIQAVIISIYEKGLQPEMCSKTTGALADYFRSIKY 126


>U40941-2|AAA81708.3|  131|Caenorhabditis elegans Profilin protein 2
           protein.
          Length = 131

 Score = 34.3 bits (75), Expect = 0.028
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +3

Query: 9   RIIRAKLGKVGVHCMKTQQAVVISLYE-EPIQPQQAASVVEKLGDYLITCGY 161
           ++I  K  + G    KT QA+VI++YE +  Q     + VE +  YL + GY
Sbjct: 80  KLIFGKKEQTGFFAAKTNQAIVIAMYEGDNAQSASVRAGVEYIAQYLASSGY 131


>AY530909-1|AAT01434.1|  131|Caenorhabditis elegans profilin-2
           protein.
          Length = 131

 Score = 34.3 bits (75), Expect = 0.028
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +3

Query: 9   RIIRAKLGKVGVHCMKTQQAVVISLYE-EPIQPQQAASVVEKLGDYLITCGY 161
           ++I  K  + G    KT QA+VI++YE +  Q     + VE +  YL + GY
Sbjct: 80  KLIFGKKEQTGFFAAKTNQAIVIAMYEGDNAQSASVRAGVEYIAQYLASSGY 131


>AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical
           protein Y32B12B.4 protein.
          Length = 1528

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = -1

Query: 337 VTQLLKLITRRCHKLSNIKNKYERSLSLHRIYKM 236
           +T LLK++  RC  LS++  K+E  +S + +Y M
Sbjct: 413 ITNLLKIVIDRCPGLSDLP-KFEEVVSTNFVYHM 445


>Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical
           protein K03H1.5 protein.
          Length = 1385

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 74  NFSL*RTHSTPAGRIRSREVRRLFNYLWLLEIEMRRD 184
           NF   +T  T   R+R+R +  +F+ + L+ I M RD
Sbjct: 495 NFENWQTSCTRLSRVRARCIMPMFHKIGLVPIRMSRD 531


>Z95559-15|CAB63361.1|  917|Caenorhabditis elegans Hypothetical
           protein Y41E3.11 protein.
          Length = 917

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 9/37 (24%), Positives = 20/37 (54%)
 Frame = -2

Query: 330 SCLNSSHDDAINYQISKTNMNGPYHFIEYTKCSYLFP 220
           +C+       I+YQI+  N+  P+  +++ +   +FP
Sbjct: 326 TCIFDLSVGTISYQINGENVGSPFESLQFREGDVIFP 362


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,179,947
Number of Sequences: 27780
Number of extensions: 144222
Number of successful extensions: 399
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)