Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_E16
         (422 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.24c |atg8||autophagy associated protein Atg8 |Schizosacc...   154   6e-39
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    25   3.7  
SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   4.8  
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    25   6.4  
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac...    25   6.4  
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc...    25   6.4  

>SPBP8B7.24c |atg8||autophagy associated protein Atg8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score =  154 bits (373), Expect = 6e-39
 Identities = 66/110 (60%), Positives = 88/110 (80%)
 Frame = +3

Query: 93  MKFQYKEEHSFEKRKTEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQF 272
           M+ Q+K++ SFEKRKTE ++IR KYPDR+PVI EK  K+ +  +DKKKYLVPSDLTVGQF
Sbjct: 1   MRSQFKDDFSFEKRKTESQRIREKYPDRIPVICEKVDKSDIAAIDKKKYLVPSDLTVGQF 60

Query: 273 YFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFS 422
            ++IRKRI L PE A+F F++ ++PPT+A M ++Y+EH  ED FLYI +S
Sbjct: 61  VYVIRKRIKLSPEKAIFIFIDEILPPTAALMSTIYEEHKSEDGFLYITYS 110


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -2

Query: 193 STITGTRSGYFLRIFSPSVFLFSKECSSLYWNFIFVF 83
           S +   R+G+ + +    +++F  EC   Y N I +F
Sbjct: 163 SPLPSPRTGHSMLLVDSKLWIFGGECQGKYLNDIHLF 199


>SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 314

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 84  KTKMKFQYKEEHSFEKRKTEGEKIRRKYPDRVP 182
           K  M+ + K+  SFEKR     +++ K P R P
Sbjct: 63  KETMEEKKKKSSSFEKRDKRRVQLKEKSPLRTP 95


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 150 KIRRKYPDRVPVIVEKAPKARLGDLDKKKY 239
           KIR +YPDR+      AP  +  D   + Y
Sbjct: 154 KIREEYPDRMMATFSVAPAPKSSDTVVEPY 183


>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
           Alg6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 506

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 153 FSHPPSSFSQKNVLLYIGISFSFFFT 76
           F  PPS +    V+L + +SF+ FFT
Sbjct: 455 FIPPPSRYPDLWVILNVTLSFAGFFT 480


>SPBC18H10.04c |sce3|tif48|translation initiation factor
           eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 132 RKTEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDL 257
           RK   +K  +   D+   I EK    RLGD +KK     S++
Sbjct: 315 RKPSADKAEKT--DKTDAIAEKVSDIRLGDGEKKSSETDSEV 354


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,725,968
Number of Sequences: 5004
Number of extensions: 35290
Number of successful extensions: 103
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)