Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_E16
(422 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1208 - 31750493-31750587,31750733-31750851,31751425-317514... 143 6e-35
07_03_0566 - 19572410-19572504,19572590-19572708,19573109-195731... 139 1e-33
08_01_0609 + 5345761-5345862,5346808-5346871,5346958-5350191,535... 87 7e-18
11_01_0001 - 336-427,515-576,704-756,974-1249,1496-1834 55 3e-08
02_04_0068 - 19442643-19442734,19442824-19442885,19443013-194430... 54 5e-08
09_06_0199 + 21526872-21527250,21527431-21527594,21527673-215277... 29 1.2
07_03_0039 - 12718972-12720699 29 1.2
04_04_0794 + 28104725-28104829,28105721-28105762,28106470-281065... 29 2.0
10_03_0007 - 6956215-6956223,6957082-6957300,6957874-6957978,695... 27 4.7
02_01_0269 + 1788788-1789508,1789629-1789658,1790127-1790368,179... 27 4.7
03_05_0197 + 21884415-21885332,21886130-21886750 27 6.2
11_06_0233 + 21565233-21566053,21566840-21567890,21568075-215687... 27 8.2
10_01_0075 - 979335-979954,980136-980405,980949-980989,981563-98... 27 8.2
04_04_1468 + 33811471-33811657,33811888-33811980,33812899-338130... 27 8.2
>04_04_1208 -
31750493-31750587,31750733-31750851,31751425-31751477,
31751567-31751622,31752690-31752726
Length = 119
Score = 143 bits (346), Expect = 6e-35
Identities = 61/109 (55%), Positives = 85/109 (77%)
Frame = +3
Query: 96 KFQYKEEHSFEKRKTEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFY 275
K +K +H+ E+R+ E +IR KY DR+PVIVEKA ++ + D+DKKKYLVP+DLTVGQF
Sbjct: 3 KSSFKLDHTLERRQAEANRIREKYSDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFV 62
Query: 276 FLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFS 422
+++RKRI L PE A+F FV N +PPT+A M ++Y+E+ DED FLY+ +S
Sbjct: 63 YVVRKRIKLSPEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYS 111
>07_03_0566 -
19572410-19572504,19572590-19572708,19573109-19573161,
19573251-19573306,19574297-19574340,19576767-19576816,
19577393-19577398,19577675-19578103
Length = 283
Score = 139 bits (336), Expect = 1e-33
Identities = 60/106 (56%), Positives = 82/106 (77%)
Frame = +3
Query: 105 YKEEHSFEKRKTEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLI 284
+K EH E+R+ E +IR KY DR+PVIVEKA K + ++DKKKYLVP+DLTVGQF +++
Sbjct: 170 FKLEHPLERRQAESARIREKYSDRIPVIVEKADKTDVPEIDKKKYLVPADLTVGQFVYVV 229
Query: 285 RKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFS 422
RKRI L PE A+F FV N +PPT++ M ++Y+E+ DED FLY+ +S
Sbjct: 230 RKRIKLSPEKAIFVFVKNTLPPTASLMSAIYEENKDEDGFLYMTYS 275
>08_01_0609 + 5345761-5345862,5346808-5346871,5346958-5350191,
5350375-5350589,5351123-5351393,5351986-5352161,
5352287-5352394,5352821-5352930,5354291-5354393,
5354658-5354828,5354952-5355080,5355322-5355504,
5355612-5355701,5355823-5355934,5356100-5356227,
5357769-5357825,5357872-5357923,5358318-5358393,
5358860-5358950,5359046-5359224,5359563-5359681,
5359783-5359880
Length = 1955
Score = 86.6 bits (205), Expect = 7e-18
Identities = 36/63 (57%), Positives = 50/63 (79%)
Frame = +3
Query: 234 KYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYI 413
+YLVP+DLTVGQF +++RKRI L E A+F FV N +PPT+A M ++Y+E+ DED FLY+
Sbjct: 1884 RYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYM 1943
Query: 414 AFS 422
+S
Sbjct: 1944 TYS 1946
Score = 54.0 bits (124), Expect = 5e-08
Identities = 22/37 (59%), Positives = 30/37 (81%)
Frame = +3
Query: 126 EKRKTEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKK 236
E+R+ E +IR KYPDR+PVIVEKA ++ + D+DKKK
Sbjct: 1806 ERRQAEANRIREKYPDRIPVIVEKAERSDIPDIDKKK 1842
>11_01_0001 - 336-427,515-576,704-756,974-1249,1496-1834
Length = 273
Score = 54.8 bits (126), Expect = 3e-08
Identities = 37/98 (37%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Frame = +3
Query: 132 RKTEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPE 311
R+ EGE+ RR + VIVEK ++ L +++K+K +HL P
Sbjct: 192 REEEGERERR---GKGQVIVEKFSRSNLPEMEKRK-------------------LHLSPG 229
Query: 312 DALFFFVNNVIPPTSATMGSLYQEHHDE-DFFLYIAFS 422
ALF FVNN +P T+ MGS+Y+ + DE D FLY+ +S
Sbjct: 230 TALFVFVNNTLPQTAQLMGSVYESYKDEGDGFLYLCYS 267
>02_04_0068 -
19442643-19442734,19442824-19442885,19443013-19443067,
19443290-19443344
Length = 87
Score = 54.0 bits (124), Expect = 5e-08
Identities = 23/47 (48%), Positives = 34/47 (72%), Gaps = 1/47 (2%)
Frame = +3
Query: 285 RKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDE-DFFLYIAFS 422
++++HL P ALF FVNN +P T+ MGS+Y+ + DE D FLY+ +S
Sbjct: 35 KRKLHLPPGTALFVFVNNTLPQTAQLMGSVYESYKDEGDGFLYLCYS 81
>09_06_0199 +
21526872-21527250,21527431-21527594,21527673-21527736,
21528001-21528134,21528302-21528385,21528526-21528600,
21528683-21528754,21528852-21528925,21529185-21529282,
21529355-21529464,21529794-21529862,21529944-21530018,
21530519-21530611,21530690-21530769,21530877-21530976,
21531150-21531586,21531676-21531706,21532873-21533822,
21533982-21534201
Length = 1102
Score = 29.5 bits (63), Expect = 1.2
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 108 KEEHSFEKRKTEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLV 245
KEE + EK++ KI++ P R EK P G K+ ++V
Sbjct: 654 KEEPTSEKKQPVSAKIKKTVPKRTSGTKEKKPDTDQGGKRKRNWMV 699
>07_03_0039 - 12718972-12720699
Length = 575
Score = 29.5 bits (63), Expect = 1.2
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 243 VPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNV-IPPTS 356
VPS L F L+R+ + P + L FF+ ++ +PPT+
Sbjct: 80 VPSSLRTSAFPSLLRRHLAFHPLNELPFFLESIGLPPTT 118
>04_04_0794 +
28104725-28104829,28105721-28105762,28106470-28106544,
28106811-28106950,28107036-28107093,28107239-28107241,
28107740-28107849,28108562-28108648,28108773-28108856,
28109212-28109277,28109377-28109488,28109949-28110149
Length = 360
Score = 28.7 bits (61), Expect = 2.0
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = -1
Query: 398 ILVVMLLVERTHSCRCWWNHIVHEKEKRVLGTKVNTFSNQEVKLT 264
+L +++L + + W N IV+ R L K+N +S+ ++L+
Sbjct: 316 VLPILVLGDSDSNSPEWLNQIVNRTRTRCLANKLNPYSDMTMRLS 360
>10_03_0007 -
6956215-6956223,6957082-6957300,6957874-6957978,
6958062-6958175,6958342-6958467,6958583-6958697,
6958791-6958867,6958956-6959179,6959848-6959953,
6960065-6960163,6960282-6960467,6960611-6960613
Length = 460
Score = 27.5 bits (58), Expect = 4.7
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 179 SSNCRESPEG*TWRPRQEEVFSTIRLNCWSIL 274
S NCRES W R E++ + +C SI+
Sbjct: 62 SENCRESQYRAYWFSRNEKIIDRLLADCSSII 93
>02_01_0269 +
1788788-1789508,1789629-1789658,1790127-1790368,
1790595-1790803,1791924-1792182
Length = 486
Score = 27.5 bits (58), Expect = 4.7
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = -3
Query: 234 SSCRGLQV*PSGLSLQLLEHDPDISCEFSHPPSSFSQKNVLLYIGISFS 88
SS R L G + H P +S S PP+ + ++ GISFS
Sbjct: 4 SSARLLAAAARGRAATTFRHAPTVSSSLSFPPNPHHRPSLRGRAGISFS 52
>03_05_0197 + 21884415-21885332,21886130-21886750
Length = 512
Score = 27.1 bits (57), Expect = 6.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 395 LVVMLLVERTHSCRCWWNHIVHEKEK 318
L++ +LV +SCR WW EK+K
Sbjct: 16 LLLFVLVNIKNSCRSWWPPPEKEKKK 41
>11_06_0233 +
21565233-21566053,21566840-21567890,21568075-21568758,
21568927-21569019,21571815-21571835
Length = 889
Score = 26.6 bits (56), Expect = 8.2
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +3
Query: 108 KEEHSFEKRKTEGEKIRRKYPDRVPVIVEKAPKARLGDLDKK 233
KEE+ +K EG + + + +EK K +L LDK+
Sbjct: 20 KEEYDLQKSVKEGIIFLKTELESIQAALEKVSKVQLDQLDKQ 61
>10_01_0075 -
979335-979954,980136-980405,980949-980989,981563-981663
Length = 343
Score = 26.6 bits (56), Expect = 8.2
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -3
Query: 207 PSGLSLQLLEHDPDISCEFSHPPS 136
P+ +L++L+H P+ + HPPS
Sbjct: 144 PATHTLRMLQHQPEPQPQLQHPPS 167
>04_04_1468 +
33811471-33811657,33811888-33811980,33812899-33813027,
33813089-33813166,33813377-33813435,33813522-33813644,
33814225-33814282,33814383-33814468,33814564-33814635
Length = 294
Score = 26.6 bits (56), Expect = 8.2
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 347 WNHIVHEKEKRVLGTKVNTFSNQEVKLTNS 258
+N + + KRV+G + T S V +TNS
Sbjct: 31 YNRVARDTRKRVVGVLLGTSSRGSVDVTNS 60
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,695,929
Number of Sequences: 37544
Number of extensions: 213523
Number of successful extensions: 612
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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