Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_E16
(422 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23511-11|AAC46797.1| 123|Caenorhabditis elegans Lc3, gabarap a... 200 4e-52
AF326943-1|AAG49393.1| 123|Caenorhabditis elegans GABA A recept... 200 4e-52
Z69385-5|CAA93421.1| 130|Caenorhabditis elegans Hypothetical pr... 80 7e-16
U29380-10|AAO38582.1| 454|Caenorhabditis elegans Hypothetical p... 27 4.2
U29380-9|AAA68745.1| 472|Caenorhabditis elegans Hypothetical pr... 27 4.2
AL033514-25|CAA22109.1| 570|Caenorhabditis elegans Hypothetical... 27 4.2
Z92812-9|CAM84813.1| 338|Caenorhabditis elegans Hypothetical pr... 27 7.3
Z81516-7|CAB04207.1| 1377|Caenorhabditis elegans Hypothetical pr... 27 7.3
Z81467-6|CAB03874.1| 1377|Caenorhabditis elegans Hypothetical pr... 27 7.3
U41279-6|AAK31423.1| 321|Caenorhabditis elegans Helix loop heli... 27 7.3
U41279-4|AAK31421.1| 313|Caenorhabditis elegans Helix loop heli... 27 7.3
U41995-2|AAA83460.1| 317|Caenorhabditis elegans Serpentine rece... 26 9.7
AF098994-5|AAC67473.3| 579|Caenorhabditis elegans Hypothetical ... 26 9.7
AF098994-4|AAO21390.1| 606|Caenorhabditis elegans Hypothetical ... 26 9.7
AC006615-1|AAK68230.1| 149|Caenorhabditis elegans Hypothetical ... 26 9.7
>U23511-11|AAC46797.1| 123|Caenorhabditis elegans Lc3, gabarap and
gate-16 familyprotein 1 protein.
Length = 123
Score = 200 bits (487), Expect = 4e-52
Identities = 90/110 (81%), Positives = 101/110 (91%)
Frame = +3
Query: 93 MKFQYKEEHSFEKRKTEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQF 272
MK+ YKEE++FEKR+ EG+KIRRKYPDR+PVIVEKAPK++L DLDKKKYLVPSDLTVGQF
Sbjct: 1 MKWAYKEENNFEKRRAEGDKIRRKYPDRIPVIVEKAPKSKLHDLDKKKYLVPSDLTVGQF 60
Query: 273 YFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFS 422
YFLIRKRI LRPEDALFFFVNNVIP T TMG LYQ+HH+ED FLYIA+S
Sbjct: 61 YFLIRKRIQLRPEDALFFFVNNVIPQTMTTMGQLYQDHHEEDLFLYIAYS 110
>AF326943-1|AAG49393.1| 123|Caenorhabditis elegans GABA A
receptor-associated protein protein.
Length = 123
Score = 200 bits (487), Expect = 4e-52
Identities = 90/110 (81%), Positives = 101/110 (91%)
Frame = +3
Query: 93 MKFQYKEEHSFEKRKTEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQF 272
MK+ YKEE++FEKR+ EG+KIRRKYPDR+PVIVEKAPK++L DLDKKKYLVPSDLTVGQF
Sbjct: 1 MKWAYKEENNFEKRRAEGDKIRRKYPDRIPVIVEKAPKSKLHDLDKKKYLVPSDLTVGQF 60
Query: 273 YFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFS 422
YFLIRKRI LRPEDALFFFVNNVIP T TMG LYQ+HH+ED FLYIA+S
Sbjct: 61 YFLIRKRIQLRPEDALFFFVNNVIPQTMTTMGQLYQDHHEEDLFLYIAYS 110
>Z69385-5|CAA93421.1| 130|Caenorhabditis elegans Hypothetical
protein ZK593.6 protein.
Length = 130
Score = 79.8 bits (188), Expect = 7e-16
Identities = 38/108 (35%), Positives = 66/108 (61%), Gaps = 2/108 (1%)
Frame = +3
Query: 105 YKEEHSFEKRKTEGEKIRRKYPDRVPVIVEKAPKAR-LGDLDKKKYLVPSDLTVGQFYFL 281
+KE F +R+ + E+IR + P++VPVI+E+ R L +D+ K+LVP +TV + +
Sbjct: 17 FKERRPFHERQKDVEEIRSQQPNKVPVIIERFDGERSLPLMDRCKFLVPEHITVAELMSI 76
Query: 282 IRKRIHLRPEDALFFFVN-NVIPPTSATMGSLYQEHHDEDFFLYIAFS 422
+R+R+ L P+ A F VN + S +M +LY + D D F+Y+ ++
Sbjct: 77 VRRRLQLHPQQAFFLLVNERSMVSNSMSMSNLYSQERDPDGFVYMVYT 124
>U29380-10|AAO38582.1| 454|Caenorhabditis elegans Hypothetical
protein ZK546.14b protein.
Length = 454
Score = 27.5 bits (58), Expect = 4.2
Identities = 19/52 (36%), Positives = 29/52 (55%)
Frame = +3
Query: 81 KKTKMKFQYKEEHSFEKRKTEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKK 236
KK KMK + K++ + KTEGEK + K R +K + R+ D+ K+K
Sbjct: 398 KKNKMKDRRKQKWENRENKTEGEK-QTKQDKR-----KKNLQKRIDDVKKRK 443
>U29380-9|AAA68745.1| 472|Caenorhabditis elegans Hypothetical
protein ZK546.14a protein.
Length = 472
Score = 27.5 bits (58), Expect = 4.2
Identities = 19/52 (36%), Positives = 29/52 (55%)
Frame = +3
Query: 81 KKTKMKFQYKEEHSFEKRKTEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKK 236
KK KMK + K++ + KTEGEK + K R +K + R+ D+ K+K
Sbjct: 416 KKNKMKDRRKQKWENRENKTEGEK-QTKQDKR-----KKNLQKRIDDVKKRK 461
>AL033514-25|CAA22109.1| 570|Caenorhabditis elegans Hypothetical
protein Y75B8A.25 protein.
Length = 570
Score = 27.5 bits (58), Expect = 4.2
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Frame = +2
Query: 149 ENSQEISGSCSSNCRESPEG*TWRPRQEEVFSTIRLNCWSILLPD*KTYSPSSRGR---- 316
E+ ++ S SS R P RPRQ +F + SI+LP P+S +
Sbjct: 107 EDFEKEFASPSSTARMVPFTARVRPRQNPIFGENMASLKSIVLPPPAPTKPASTPKDAHE 166
Query: 317 AFLFREQCDSTNICNYGFSLPGASRRG 397
+ + DS N+ +Y S P + G
Sbjct: 167 TVFYPQTHDSFNLDHYNGSRPSFAFAG 193
>Z92812-9|CAM84813.1| 338|Caenorhabditis elegans Hypothetical
protein T03E6.9 protein.
Length = 338
Score = 26.6 bits (56), Expect = 7.3
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -2
Query: 214 SLAFGAFSTITGTRSGY-FLRIFSPSVFLFSKECSSLYWNFIFVFFY 77
SL FGA+ +ITG S + L + S + SKE ++ NF + Y
Sbjct: 209 SLIFGAWCSITGVTSVFTCLLMIYESRNIVSKETLNMQRNFTGILIY 255
>Z81516-7|CAB04207.1| 1377|Caenorhabditis elegans Hypothetical protein
F26H9.8 protein.
Length = 1377
Score = 26.6 bits (56), Expect = 7.3
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -2
Query: 250 DGTKYFFLSRSPSLAFGAFSTITGTRSGYFLRIFSPSVFLFSKECSSLYW 101
+ K +F S PS FS +G F+RI SV +K +W
Sbjct: 1076 NSAKNYFASPEPSEVINVFSLASGHLYERFMRIMMTSVLNNTKTQKVKFW 1125
>Z81467-6|CAB03874.1| 1377|Caenorhabditis elegans Hypothetical protein
F26H9.8 protein.
Length = 1377
Score = 26.6 bits (56), Expect = 7.3
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -2
Query: 250 DGTKYFFLSRSPSLAFGAFSTITGTRSGYFLRIFSPSVFLFSKECSSLYW 101
+ K +F S PS FS +G F+RI SV +K +W
Sbjct: 1076 NSAKNYFASPEPSEVINVFSLASGHLYERFMRIMMTSVLNNTKTQKVKFW 1125
>U41279-6|AAK31423.1| 321|Caenorhabditis elegans Helix loop helix
protein 27 protein.
Length = 321
Score = 26.6 bits (56), Expect = 7.3
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +3
Query: 81 KKTKMKFQYKEEHSFEKRKTEGEKIRRKYPD 173
+ T+ KF + E K KTE EKIRRK D
Sbjct: 134 ESTRRKFDTESER--RKVKTEREKIRRKKQD 162
>U41279-4|AAK31421.1| 313|Caenorhabditis elegans Helix loop helix
protein 25 protein.
Length = 313
Score = 26.6 bits (56), Expect = 7.3
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +3
Query: 81 KKTKMKFQYKEEHSFEKRKTEGEKIRRKYPD 173
+ T+ KF + E K KTE EKIRRK D
Sbjct: 126 ESTRRKFDTESER--RKVKTEREKIRRKKQD 154
>U41995-2|AAA83460.1| 317|Caenorhabditis elegans Serpentine
receptor, class x protein46 protein.
Length = 317
Score = 26.2 bits (55), Expect = 9.7
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -2
Query: 196 FSTITGTRSGYFLRIFSPSVFLFSKECSSLYWNFIF 89
F ++TG + + + +F P V F+K + WN F
Sbjct: 14 FVSLTGVFTNWTVLLFLPKVSSFNKSFGYITWNQAF 49
>AF098994-5|AAC67473.3| 579|Caenorhabditis elegans Hypothetical
protein T06A4.1a protein.
Length = 579
Score = 26.2 bits (55), Expect = 9.7
Identities = 9/30 (30%), Positives = 21/30 (70%)
Frame = +3
Query: 99 FQYKEEHSFEKRKTEGEKIRRKYPDRVPVI 188
F Y + +S E+ +TE ++++++YP + +I
Sbjct: 123 FAYDKYNSLEEIQTEMKRLKKEYPTMITLI 152
>AF098994-4|AAO21390.1| 606|Caenorhabditis elegans Hypothetical
protein T06A4.1b protein.
Length = 606
Score = 26.2 bits (55), Expect = 9.7
Identities = 9/30 (30%), Positives = 21/30 (70%)
Frame = +3
Query: 99 FQYKEEHSFEKRKTEGEKIRRKYPDRVPVI 188
F Y + +S E+ +TE ++++++YP + +I
Sbjct: 123 FAYDKYNSLEEIQTEMKRLKKEYPTMITLI 152
>AC006615-1|AAK68230.1| 149|Caenorhabditis elegans Hypothetical
protein C36B7.4 protein.
Length = 149
Score = 26.2 bits (55), Expect = 9.7
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = -1
Query: 200 GFLYNYWNTIRIFPA-NFLTLR 138
GF+YN+ N R FP NFL L+
Sbjct: 99 GFVYNFENMRRAFPKHNFLALK 120
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,669,430
Number of Sequences: 27780
Number of extensions: 203168
Number of successful extensions: 703
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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