Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_E16
         (422 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    24   0.81 
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              21   7.5  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    20   10.0 
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    20   10.0 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    20   10.0 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    20   10.0 
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    20   10.0 
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    20   10.0 

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.8 bits (49), Expect = 0.81
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +2

Query: 212 TWRPRQEEVFSTIRLNCWSILLPD*KTYSPSSRG 313
           TW+  + +  ++IR+  + I +PD   +S +S G
Sbjct: 96  TWKSSEFDSINSIRVKSYEIWVPDIVMHSVTSVG 129


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 4  RGKNKKQVAVDCVELNNS 57
          R KNKK +  +CV   N+
Sbjct: 29 RKKNKKPLPTECVFCRNN 46


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = +3

Query: 102 QYKEEHSFEKRKTEGEKIRRKYPDR 176
           +Y+++  +EK   E EK+  +  +R
Sbjct: 11  EYRKDRRYEKLHNEKEKLLEERTNR 35


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = +3

Query: 102 QYKEEHSFEKRKTEGEKIRRKYPDR 176
           +Y+++  +EK   E EK+  +  +R
Sbjct: 11  EYRKDRRYEKLHNEKEKLLEERTNR 35


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 321 FFFVNNVIPPTSATM 365
           F  +  +IPPTS T+
Sbjct: 282 FLLLAEIIPPTSLTV 296


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 171 PDISCEFSHPPSSFSQKNVLL 109
           P+IS  F+H P++ + + V L
Sbjct: 192 PEISVNFAHFPATPTGREVAL 212


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +2

Query: 176 CSSNCRESPEG*TWRPRQEEVFSTI 250
           CS NC+ +    T RP  E  F  I
Sbjct: 242 CSGNCKLNDILLTVRPHLELTFENI 266


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +2

Query: 176 CSSNCRESPEG*TWRPRQEEVFSTI 250
           CS NC+ +    T RP  E  F  I
Sbjct: 242 CSGNCKLNDILLTVRPHLELTFENI 266


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,865
Number of Sequences: 438
Number of extensions: 2347
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10873896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)