Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_E15
(411 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_05_0014 + 18392622-18392834,18393064-18393147,18393709-183937... 35 0.022
03_02_0124 - 5749183-5749773,5750628-5751160,5751191-5753035,575... 33 0.067
11_06_0559 + 24972403-24972445,24972590-24972680,24973911-249740... 31 0.47
06_01_1138 - 9429447-9433868 29 1.9
05_06_0228 + 26570066-26571352 28 3.3
01_02_0078 - 10894871-10895841,10897268-10898426 28 3.3
02_02_0670 + 12787817-12787876,12788129-12788388,12788869-127892... 27 5.8
01_01_0104 + 780442-781273,782514-783424 27 5.8
02_01_0570 - 4195409-4195443,4196245-4196333,4196539-4196630,419... 27 7.7
>11_05_0014 +
18392622-18392834,18393064-18393147,18393709-18393797,
18393889-18394063,18394370-18394489,18394591-18394677,
18394755-18394826,18395166-18395279,18395387-18395487,
18395576-18395669,18395794-18395961,18396287-18396352,
18396475-18396531,18396708-18396927,18397015-18397151,
18397573-18397641,18397722-18397781,18397927-18397998,
18398171-18398218,18398376-18398495,18398743-18398808,
18399341-18399453,18399821-18399905,18400246-18400356,
18400436-18400531,18401075-18401143,18401235-18401453
Length = 974
Score = 35.1 bits (77), Expect = 0.022
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = +1
Query: 181 DFSIGFGYYPGCVGDNREPANRSSGAYIFRPNSTSP 288
+F + YY G G+ +P ++SGAYIFRPN T P
Sbjct: 603 NFEQKYKYYIGQDGNGSDP--QASGAYIFRPNGTVP 636
>03_02_0124 -
5749183-5749773,5750628-5751160,5751191-5753035,
5753632-5753820,5753911-5754013,5754087-5754269,
5754392-5754484,5755031-5755219,5756133-5756327
Length = 1306
Score = 33.5 bits (73), Expect = 0.067
Identities = 16/67 (23%), Positives = 31/67 (46%)
Frame = +1
Query: 160 DEPNSSRDFSIGFGYYPGCVGDNREPANRSSGAYIFRPNSTSPEPYRSQARVKRIENGNI 339
D+ N+ ++ +GF Y G + + + + + PNS S P+ Q + +NG +
Sbjct: 714 DDGNNWHEYGVGFPRYFNHQGRDPQMRHFNGKEHSSSPNSVSGAPFERQGEIAVEDNGAV 773
Query: 340 RRTVTNV 360
TN+
Sbjct: 774 EENYTNM 780
>11_06_0559 +
24972403-24972445,24972590-24972680,24973911-24974030,
24974121-24974237,24974745-24974840,24975317-24975610,
24977153-24977258,24977365-24977566,24977671-24977792
Length = 396
Score = 30.7 bits (66), Expect = 0.47
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = +1
Query: 202 YYPGCVGDNREPANRSSGAYIFRPNSTSPEPYRSQARVKRIENGNIRRTVTNVG 363
+ PGC +R P R S Y RP + + Q++ K ++ N+ + +G
Sbjct: 45 WIPGCASADRRPRVRQSVLYSDRPKRSQGIRGQVQSKTKSLDEKNVSEVSSELG 98
>06_01_1138 - 9429447-9433868
Length = 1473
Score = 28.7 bits (61), Expect = 1.9
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +1
Query: 262 IFRPNSTSPEPYRSQARVKRIENGNIRRTVTNVGDELSIIR 384
+F P ST P P QA + +IR V N L IIR
Sbjct: 428 MFPPASTKPPPQSEQAAASTLGEDHIREIVHNHKITLEIIR 468
>05_06_0228 + 26570066-26571352
Length = 428
Score = 27.9 bits (59), Expect = 3.3
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = +1
Query: 55 KEKFVT-DXXXXXXXXXXKYDDIFSKMDEDEM--RMLSDEPNSSRDFSIGFGYYPG 213
KEKF T + ++ +S++D DE+ RML SR + G G YPG
Sbjct: 308 KEKFNTVEEDEPSQNRSAHFEYYWSELDLDELDGRMLFVGRGCSRSYEAGDGRYPG 363
>01_02_0078 - 10894871-10895841,10897268-10898426
Length = 709
Score = 27.9 bits (59), Expect = 3.3
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +1
Query: 1 ARGKSVNDINKYQVNTINKEKFVT-DXXXXXXXXXXKYDDIFSKMDEDEMRMLSDEPNSS 177
A G+ + ++V K+KF T + ++ +S++DE + RML S
Sbjct: 286 ASGRGQRTTSAFRV--FQKKKFNTGEEDEPSQNRSAHFEYYWSELDELDGRMLFVGLGCS 343
Query: 178 RDFSIGFGYYPG 213
R + G G YPG
Sbjct: 344 RSYKAGDGRYPG 355
>02_02_0670 +
12787817-12787876,12788129-12788388,12788869-12789205,
12789457-12789549
Length = 249
Score = 27.1 bits (57), Expect = 5.8
Identities = 18/66 (27%), Positives = 29/66 (43%)
Frame = -3
Query: 304 DSYKVQG*SSSV*IYKHQNYDWQVLCYHQRIQGNSQNQ*RNLCLNLAHPRAFSFRLHPFS 125
+ ++ +G + K Q DW Y +++ + RNL L HP +F LH F
Sbjct: 59 EQFRAEGYGNDKVRSKDQILDWSDWIY-LKVEPEDE---RNLALWPKHPSSFRDALHEFV 114
Query: 124 KICHRI 107
C R+
Sbjct: 115 VRCRRV 120
>01_01_0104 + 780442-781273,782514-783424
Length = 580
Score = 27.1 bits (57), Expect = 5.8
Identities = 16/42 (38%), Positives = 18/42 (42%)
Frame = +1
Query: 205 YPGCVGDNREPANRSSGAYIFRPNSTSPEPYRSQARVKRIEN 330
Y GC R PA S + F P+ TSP PY EN
Sbjct: 127 YHGCNLYRRIPAKIVSCSKEFTPSGTSPVPYELDHLQNAAEN 168
>02_01_0570 -
4195409-4195443,4196245-4196333,4196539-4196630,
4196726-4196833,4196984-4197118,4197211-4197256,
4197358-4197458,4198285-4198422,4198503-4198601,
4198740-4198856,4199195-4199356,4199734-4199793,
4200371-4200538,4200608-4200718,4201401-4201499,
4201579-4201644,4202407-4202490,4202563-4202605,
4202684-4202739,4202817-4202925,4203442-4203524,
4203842-4203925,4204311-4204382,4204462-4204539,
4204633-4204716,4204806-4204876,4205943-4206012,
4206495-4206626,4207168-4207284,4208185-4208367
Length = 963
Score = 26.6 bits (56), Expect = 7.7
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 143 K*ECSRMSQIQAEISLLVLAITLDALVITENLPI-VVLVLIY 265
K + S S I I +L +A+T+ + + E LP+ V L L Y
Sbjct: 342 KGQTSVKSTIFGTIKILTIAVTIVVVAVPEGLPLAVTLTLAY 383
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.313 0.132 0.373
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,443,392
Number of Sequences: 37544
Number of extensions: 178363
Number of successful extensions: 286
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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