Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_E13
         (389 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.07c |mrp2||mitochondrial ribosomal protein subunit S14|...    39   3e-04
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    24   7.2  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    24   7.2  
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    24   7.2  
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c...    24   9.5  
SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo...    24   9.5  

>SPAC23H3.07c |mrp2||mitochondrial ribosomal protein subunit
           S14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 105

 Score = 38.7 bits (86), Expect = 3e-04
 Identities = 21/56 (37%), Positives = 30/56 (53%)
 Frame = +2

Query: 221 RDVKRRRMSAESFLERSRINALRKNDILPVEIKELADKDINKFDLNATPMRINNRC 388
           RD+  RR+ AE  +ER     + +N  LP+ ++  A K I     NA P +I NRC
Sbjct: 13  RDLLCRRLFAEHEVERQSNLYIYRNPELPLRVRLEAKKRIEALPTNAHPTKIKNRC 68


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +2

Query: 284 LRKNDILPV-EIKELADKDINKFDLNATPMRINN 382
           +R ++ LPV +I E  DKD N    +  P RI++
Sbjct: 78  VRNSEGLPVMDIHEEVDKDGNIISASVAPQRISS 111


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 10/38 (26%), Positives = 23/38 (60%)
 Frame = -3

Query: 300 ISFFLSALIRDLSKKDSALMRRLLTSRIISQFAHLLRT 187
           +S+ LS+++RD+  +D  L  +L   + +    H++R+
Sbjct: 474 LSWILSSVVRDILVEDELLNLQLKIRKFLMFTFHIIRS 511


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 343 VDIFIS*FFNFNRKNIILSQCVNTRPF*KRFS 248
           +D+  S +F +   N I+S   NTR   +R+S
Sbjct: 291 IDLEPSGYFFYRHNNYIISDSSNTREVLRRYS 322


>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 585

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 7/28 (25%), Positives = 18/28 (64%)
 Frame = -2

Query: 307 RKNIILSQCVNTRPF*KRFSTHATPFDV 224
           ++N + ++C++     +++S+   PFDV
Sbjct: 207 KRNYVENECIHILKLTEKYSSQNVPFDV 234


>SPBC16A3.12c |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 443

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 358 IQVKFVDIFIS*FFNFNRKNIILSQ 284
           I VK VD+ +   FN++  NI L+Q
Sbjct: 285 IFVKIVDVSLKILFNWDLSNISLNQ 309


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,292,903
Number of Sequences: 5004
Number of extensions: 21813
Number of successful extensions: 49
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)