Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_E13
         (389 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99297-3|CAB16601.1|  128|Homo sapiens mitochondrial ribosomal p...    72   6e-13
BC009788-1|AAH09788.1|  128|Homo sapiens mitochondrial ribosomal...    72   6e-13
AL049705-1|CAB41269.1|  128|Homo sapiens hypothetical protein pr...    72   6e-13
AB051350-1|BAB54940.1|   39|Homo sapiens mitochondrial ribosomal...    46   6e-05

>Z99297-3|CAB16601.1|  128|Homo sapiens mitochondrial ribosomal
           protein S14 protein.
          Length = 128

 Score = 72.1 bits (169), Expect = 6e-13
 Identities = 34/68 (50%), Positives = 49/68 (72%)
 Frame = +2

Query: 185 QVRNKWANWLMIRDVKRRRMSAESFLERSRINALRKNDILPVEIKELADKDINKFDLNAT 364
           QVR+ + +W M RDVKRR+M+ E   ER RIN+LRKN ILP  ++++AD++I     ++ 
Sbjct: 24  QVRSHYVDWRMWRDVKRRKMAYEYADERLRINSLRKNTILPKILQDVADEEIAALPRDSC 83

Query: 365 PMRINNRC 388
           P+RI NRC
Sbjct: 84  PVRIRNRC 91


>BC009788-1|AAH09788.1|  128|Homo sapiens mitochondrial ribosomal
           protein S14 protein.
          Length = 128

 Score = 72.1 bits (169), Expect = 6e-13
 Identities = 34/68 (50%), Positives = 49/68 (72%)
 Frame = +2

Query: 185 QVRNKWANWLMIRDVKRRRMSAESFLERSRINALRKNDILPVEIKELADKDINKFDLNAT 364
           QVR+ + +W M RDVKRR+M+ E   ER RIN+LRKN ILP  ++++AD++I     ++ 
Sbjct: 24  QVRSHYVDWRMWRDVKRRKMAYEYADERLRINSLRKNTILPKILQDVADEEIAALPRDSC 83

Query: 365 PMRINNRC 388
           P+RI NRC
Sbjct: 84  PVRIRNRC 91


>AL049705-1|CAB41269.1|  128|Homo sapiens hypothetical protein
           protein.
          Length = 128

 Score = 72.1 bits (169), Expect = 6e-13
 Identities = 34/68 (50%), Positives = 49/68 (72%)
 Frame = +2

Query: 185 QVRNKWANWLMIRDVKRRRMSAESFLERSRINALRKNDILPVEIKELADKDINKFDLNAT 364
           QVR+ + +W M RDVKRR+M+ E   ER RIN+LRKN ILP  ++++AD++I     ++ 
Sbjct: 24  QVRSHYVDWRMWRDVKRRKMAYEYADERLRINSLRKNTILPKILQDVADEEIAALPRDSC 83

Query: 365 PMRINNRC 388
           P+RI NRC
Sbjct: 84  PVRIRNRC 91


>AB051350-1|BAB54940.1|   39|Homo sapiens mitochondrial ribosomal
           protein S14 protein.
          Length = 39

 Score = 45.6 bits (103), Expect = 6e-05
 Identities = 22/34 (64%), Positives = 26/34 (76%)
 Frame = +2

Query: 206 NWLMIRDVKRRRMSAESFLERSRINALRKNDILP 307
           +W M RDVKRR+M+ E   ER RIN+LRKN ILP
Sbjct: 2   DWRMWRDVKRRKMAYEYADERLRINSLRKNTILP 35


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,988,969
Number of Sequences: 237096
Number of extensions: 591181
Number of successful extensions: 4592
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4592
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2698607930
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)