Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_E13
         (389 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48809-3|CAA88746.2|  199|Caenorhabditis elegans Hypothetical pr...    48   3e-06
AF039050-11|AAC47941.1|  333|Caenorhabditis elegans Seven tm rec...    29   1.5  
U28735-6|AAF99954.1| 1493|Caenorhabditis elegans Hypothetical pr...    28   2.0  
Z83115-3|CAB05556.1|  393|Caenorhabditis elegans Hypothetical pr...    28   2.7  
AC006761-6|AAF60548.2|  242|Caenorhabditis elegans Hypothetical ...    28   2.7  
Z81516-7|CAB04207.1| 1377|Caenorhabditis elegans Hypothetical pr...    27   4.7  
Z81467-6|CAB03874.1| 1377|Caenorhabditis elegans Hypothetical pr...    27   4.7  

>Z48809-3|CAA88746.2|  199|Caenorhabditis elegans Hypothetical
           protein T01E8.6 protein.
          Length = 199

 Score = 47.6 bits (108), Expect = 3e-06
 Identities = 24/63 (38%), Positives = 34/63 (53%)
 Frame = +2

Query: 200 WANWLMIRDVKRRRMSAESFLERSRINALRKNDILPVEIKELADKDINKFDLNATPMRIN 379
           WA+W  +RDVKRR    E   +R R+ A++ N ILP  I++ A + + K      P  I 
Sbjct: 100 WASWRQLRDVKRREQIQEVGADRMRLKAIKFNTILPQAIRDEAAEKMQKARKYDHPRLIL 159

Query: 380 NRC 388
           N C
Sbjct: 160 NMC 162


>AF039050-11|AAC47941.1|  333|Caenorhabditis elegans Seven tm
           receptor protein 83 protein.
          Length = 333

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 77  ENNVFWV**VILFYFNWFKVSFF 9
           + ++ WV   ILF+ NWF V++F
Sbjct: 130 KRHIVWVSATILFFLNWFLVAWF 152


>U28735-6|AAF99954.1| 1493|Caenorhabditis elegans Hypothetical protein
            F48E3.3 protein.
          Length = 1493

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
 Frame = +2

Query: 170  GYGYQQVRNKWANWLMIRDVKRRRMSAESFLERSRINALRKNDILPVEIKELADKD---I 340
            G+ Y+ +  KW  WL  +  K+R M     L    +  L    ++ V+  ++   D   +
Sbjct: 1257 GFEYELIEYKWPRWLHQQKEKQRIMWGFKILFLDVLFPLDVQKVIFVDADQVVRADLMEL 1316

Query: 341  NKFDLNATP 367
             KFDL   P
Sbjct: 1317 MKFDLGNAP 1325


>Z83115-3|CAB05556.1|  393|Caenorhabditis elegans Hypothetical
           protein K11D2.2 protein.
          Length = 393

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 107 IIMNLNVANIGKFIWKSQNLAGY 175
           +I+N+N    GK ++KS N AGY
Sbjct: 182 MIINVNWLKDGKLLYKSNNFAGY 204


>AC006761-6|AAF60548.2|  242|Caenorhabditis elegans Hypothetical
           protein Y41G9A.2 protein.
          Length = 242

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +2

Query: 164 LAGYGYQQVRNKWANWLMIRDVKRRRMSAESFLERSRINALRKND 298
           + G GYQ + N W  +L + + +   M   SF + +R      ND
Sbjct: 125 VCGEGYQSMLNNWNCYLSVAESREIAMCEASFTQLARNTEQMYND 169


>Z81516-7|CAB04207.1| 1377|Caenorhabditis elegans Hypothetical protein
            F26H9.8 protein.
          Length = 1377

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
 Frame = +2

Query: 173  YGYQQVRNKWANWLMIRDVKRRRMSAESFLERSRINALRKNDILPVEIKELADKDINK-- 346
            + ++ V  KW  WL  +  K+R M     L    +  L  + I+ V+  ++   D+ +  
Sbjct: 1148 FEFELVEYKWPKWLHKQTEKQRVMWGYKILFLDVLFPLNVDKIIFVDADQVVRADLQELM 1207

Query: 347  -FDLNATP 367
             F+LN  P
Sbjct: 1208 DFNLNGAP 1215


>Z81467-6|CAB03874.1| 1377|Caenorhabditis elegans Hypothetical protein
            F26H9.8 protein.
          Length = 1377

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
 Frame = +2

Query: 173  YGYQQVRNKWANWLMIRDVKRRRMSAESFLERSRINALRKNDILPVEIKELADKDINK-- 346
            + ++ V  KW  WL  +  K+R M     L    +  L  + I+ V+  ++   D+ +  
Sbjct: 1148 FEFELVEYKWPKWLHKQTEKQRVMWGYKILFLDVLFPLNVDKIIFVDADQVVRADLQELM 1207

Query: 347  -FDLNATP 367
             F+LN  P
Sbjct: 1208 DFNLNGAP 1215


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,909,973
Number of Sequences: 27780
Number of extensions: 114371
Number of successful extensions: 277
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)