Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_E12
         (402 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ...    27   1.1  
SPBC19G7.16 |iws1||transcription elongation factor complex subun...    26   2.5  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    25   3.3  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    25   3.3  
SPCC4B3.09c |||mitochondrial ribosomal protein subunit L12|Schiz...    25   3.3  
SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce...    25   3.3  
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom...    25   4.4  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    25   5.8  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   5.8  
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    24   7.7  
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    24   7.7  

>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 147 LGEKSSQDFENLLKRATPYFKRIDDDFRAEWD 242
           L E S+ D ENL K  +P F  ++  F+   D
Sbjct: 52  LSENSNSDSENLAKTLSPIFDNLESVFKKGTD 83


>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
           Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 171 FENLLKRATPYFKRIDDDFRAEWDK 245
           F  + K+  P+ KRI D+  +EW +
Sbjct: 291 FYTISKKPEPFIKRIADNLVSEWSR 315


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 261 SVDKVFKEFSHTLNEVIHYLAKIIDEVLQGTK 356
           SVDKV  + +  L E ++     + E+L+GT+
Sbjct: 632 SVDKVLDQTAEALEEFVNTAPPKVQELLKGTE 663


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 306 VIHYLAKIIDEVLQGTKPIVDQIIKT 383
           +I YLA I      G+  + +QIIKT
Sbjct: 183 IIQYLAAIASSTTVGSSQVEEQIIKT 208


>SPCC4B3.09c |||mitochondrial ribosomal protein subunit
           L12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 206

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 20/64 (31%), Positives = 28/64 (43%)
 Frame = -3

Query: 400 LDVSVNVFMI*STIGLVPCKTSSIILAK**MTSFRVCENSLNTLSTEISL*NLSHSALKS 221
           L V V +  + + I L P  TSSIIL     + FR+       L    S  N + S + +
Sbjct: 5   LKVVVTILNLPTPISLAPYFTSSIILK---YSMFRIASRQTRNLRALSSSKNWARSLVNT 61

Query: 220 SSIR 209
            S R
Sbjct: 62  RSFR 65


>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = +3

Query: 84  FNHLMTTVKKDVEGLNDRIKDLGEKSSQDFENLLKRATPYFKRIDDDF 227
           F  L+ T++ D+EGLN  +    + S +  +  ++R     + +D+ F
Sbjct: 133 FQSLLKTLETDIEGLN-LVDHTHDPSDESIKQTVQRLRSSIEGLDEAF 179


>SPCC1442.02 ||SPCC1450.18|DUF1760 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 562

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = -2

Query: 392 FSECLYDLIDNRFGSLQNFIDNLS*IMNDLVQSV*KFFEYFVNGNFLVE-FIPFGSKVIV 216
           F +C   LI+  F S Q FI   S I++ L +   K    FVN NFL+  F    + + +
Sbjct: 101 FLKCCELLINGGFESPQQFISLNSAILSALHRISTKRPVLFVN-NFLISLFSGLANILQI 159

Query: 215 NTFEVWC 195
           ++ E++C
Sbjct: 160 DSDELYC 166


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1687

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
 Frame = +3

Query: 105  VKKDVEGLNDRIKDLGEKSSQDFENLLKRATPYFKRIDD-DFRAEWDKFYKEISVDKVFK 281
            V+K  E L ++  +  +KSS + E+ +  +T     +      A+   F   IS+D   +
Sbjct: 1582 VQKVSERLQEQASEKDDKSSVESEHSILTSTTRTPSLGIYTTDAQLRNFLNRISIDAYEE 1641

Query: 282  EFSHTLNEVIHYLAKIIDEVLQ 347
             +S +  ++  +   I  EVLQ
Sbjct: 1642 SYSFSTIDIQSFENSIYREVLQ 1663


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 12/60 (20%), Positives = 32/60 (53%)
 Frame = -2

Query: 221  IVNTFEVWCRTFQKILEVLA*FLAEIFDAVIQTFNVFFNSSHQMIEIVLRGTVFRFNGII 42
            ++  +++  ++F  ++ V   F++ +  +   +FN  +++ HQM+ +VL      F  +I
Sbjct: 3711 LIRRYKLSIKSFLSVVVVFQHFIS-LKKSYSFSFNFIWSTFHQMLNVVLENRNQDFKSLI 3769


>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 153 EKSSQDFENLLKRATPYFKRIDDDFRAEWDKFY 251
           +K S D  +LL    P  K   DD+ ++WD  Y
Sbjct: 637 DKLSSDLSSLLTDE-PVVKTEMDDWNSDWDTVY 668


>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = +3

Query: 90  HLMTTVKKDVEGLNDRIKDLGEKSSQDFENLLKRATPYFK 209
           HL T VKK  E   + I  L  +      +  K A PY K
Sbjct: 386 HLPTNVKKAAEIKREEINSLKRREENIRRHSKKGAVPYEK 425


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,606,834
Number of Sequences: 5004
Number of extensions: 30700
Number of successful extensions: 107
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)