Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_E12
         (402 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC134417-1|AAI34418.1|  363|Homo sapiens chromosome 20 open read...    30   2.5  
AL034548-3|CAB81629.2|  363|Homo sapiens chromosome 20 open read...    30   2.5  
AL034548-2|CAI19175.2|  328|Homo sapiens chromosome 20 open read...    30   2.5  
AK097394-1|BAC05033.1|  363|Homo sapiens protein ( Homo sapiens ...    29   4.4  
AK091924-1|BAC03772.1|  179|Homo sapiens protein ( Homo sapiens ...    29   4.4  
AJ320497-1|CAC60121.1| 4523|Homo sapiens axonemal beta heavy cha...    29   4.4  

>BC134417-1|AAI34418.1|  363|Homo sapiens chromosome 20 open reading
           frame 96 protein.
          Length = 363

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 22/93 (23%), Positives = 42/93 (45%)
 Frame = +3

Query: 60  EYGASKDNFNHLMTTVKKDVEGLNDRIKDLGEKSSQDFENLLKRATPYFKRIDDDFRAEW 239
           EY       + LM  +++  +   D + DLGE   +  E+L  +     K+I     AE 
Sbjct: 218 EYSIKSVQISTLMRQLQQVKDSQQDELDDLGEMRRKVLESLSDKIQKKKKKILSSVVAET 277

Query: 240 DKFYKEISVDKVFKEFSHTLNEVIHYLAKIIDE 338
            + Y+E  + K+++  S    + +    +IID+
Sbjct: 278 QRPYEEALLQKMWE--SQDFLKCMQRFREIIDQ 308


>AL034548-3|CAB81629.2|  363|Homo sapiens chromosome 20 open reading
           frame 96 protein.
          Length = 363

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 22/93 (23%), Positives = 42/93 (45%)
 Frame = +3

Query: 60  EYGASKDNFNHLMTTVKKDVEGLNDRIKDLGEKSSQDFENLLKRATPYFKRIDDDFRAEW 239
           EY       + LM  +++  +   D + DLGE   +  E+L  +     K+I     AE 
Sbjct: 218 EYSIKSVQISTLMRQLQQVKDSQQDELDDLGEMRRKVLESLSDKIQKKKKKILSSVVAET 277

Query: 240 DKFYKEISVDKVFKEFSHTLNEVIHYLAKIIDE 338
            + Y+E  + K+++  S    + +    +IID+
Sbjct: 278 QRPYEEALLQKMWE--SQDFLKCMQRFREIIDQ 308


>AL034548-2|CAI19175.2|  328|Homo sapiens chromosome 20 open reading
           frame 96 protein.
          Length = 328

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 22/93 (23%), Positives = 42/93 (45%)
 Frame = +3

Query: 60  EYGASKDNFNHLMTTVKKDVEGLNDRIKDLGEKSSQDFENLLKRATPYFKRIDDDFRAEW 239
           EY       + LM  +++  +   D + DLGE   +  E+L  +     K+I     AE 
Sbjct: 183 EYSIKSVQISTLMRQLQQVKDSQQDELDDLGEMRRKVLESLSDKIQKKKKKILSSVVAET 242

Query: 240 DKFYKEISVDKVFKEFSHTLNEVIHYLAKIIDE 338
            + Y+E  + K+++  S    + +    +IID+
Sbjct: 243 QRPYEEALLQKMWE--SQDFLKCMQRFREIIDQ 273


>AK097394-1|BAC05033.1|  363|Homo sapiens protein ( Homo sapiens
           cDNA FLJ40075 fis, clone TESTI2000489. ).
          Length = 363

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 18/74 (24%), Positives = 34/74 (45%)
 Frame = +3

Query: 60  EYGASKDNFNHLMTTVKKDVEGLNDRIKDLGEKSSQDFENLLKRATPYFKRIDDDFRAEW 239
           EY       + LM  +++  +   D + DLGE   +  E+L  +     K+I     AE 
Sbjct: 218 EYSIKSVQISTLMRQLQQVKDSQQDELDDLGEMRRKVLESLSDKIQKKKKKILSSVVAET 277

Query: 240 DKFYKEISVDKVFK 281
            + Y+E  + K+++
Sbjct: 278 QRPYEEALLQKMWE 291


>AK091924-1|BAC03772.1|  179|Homo sapiens protein ( Homo sapiens
           cDNA FLJ34605 fis, clone KIDNE2013489. ).
          Length = 179

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 18/74 (24%), Positives = 34/74 (45%)
 Frame = +3

Query: 60  EYGASKDNFNHLMTTVKKDVEGLNDRIKDLGEKSSQDFENLLKRATPYFKRIDDDFRAEW 239
           EY       + LM  +++  +   D + DLGE   +  E+L  +     K+I     AE 
Sbjct: 83  EYSIKSVQISTLMRQLQQVKDSQQDELDDLGEMRRKVLESLSDKIQKKKKKILSSVVAET 142

Query: 240 DKFYKEISVDKVFK 281
            + Y+E  + K+++
Sbjct: 143 QRPYEEALLQKMWE 156


>AJ320497-1|CAC60121.1| 4523|Homo sapiens axonemal beta heavy chain
            dynein type 11 protein.
          Length = 4523

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 210  RIDDDFRAEWDKFYKEISVDKVFKEFSHT 296
            R++DD R   DK  KE+  +KV  E S T
Sbjct: 1444 RVEDDVRRIVDKAVKELGTEKVITEISQT 1472


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,537,952
Number of Sequences: 237096
Number of extensions: 829137
Number of successful extensions: 2157
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2157
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2928276690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)