Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_E11
         (367 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    26   2.1  
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|...    25   2.8  
SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom...    24   6.4  
SPBC19C7.04c |||conserved fungal protein|Schizosaccharomyces pom...    24   6.4  
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    24   6.4  
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p...    24   6.4  
SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyce...    24   6.4  

>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 12  SPKVMRGEVRTTPPHFAELIPS 77
           +P V+ G+V   PP+ AE+IP+
Sbjct: 231 APLVVNGKVSGNPPYPAEIIPT 252


>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 612

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = +1

Query: 67  LFRPRCDRGEPVAISGTNSKL 129
           LF+ RCD  +P+++S T+S++
Sbjct: 428 LFKIRCDSKQPLSMSVTDSRI 448


>SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 453

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
 Frame = -3

Query: 185 FDPRVGSSDIGFFYSVSSRSLEFVP------DMATGSPLSHLGRNKLGEM 54
           F  R+ +  +   YSVS   L FVP      + A    LS  GR +L +M
Sbjct: 89  FQQRLLNGSVPIDYSVSGNPLSFVPTWTPVIEAANADALSSSGRVELFDM 138


>SPBC19C7.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 124

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = +1

Query: 25  CEVKYELHHHISPSLFRPRCDRGEPVAISGTNSKL 129
           C+  ++   H   + +RP  D   P++ +   SKL
Sbjct: 72  CDENFKTKPHREQNQYRPTADSFRPLSFASMESKL 106


>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 181 IPGSGQVILGFSTQYHPGVWNL 116
           IP + ++I G    Y PG WNL
Sbjct: 442 IPIACKLIFGKRLNYKPGPWNL 463


>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 591

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 110 DMATGSPLSHLGRNKLGEMWWCSSYFTS 27
           D A G+P++ L +       WC SYF +
Sbjct: 287 DDANGNPIASLSKIVPKGWQWCLSYFAT 314


>SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +1

Query: 25  CEVKYELHHHISPSLFRPRCDRGEPVAISGTNSKLR 132
           CE++ +LH H +P+  RPR    + + I   ++K++
Sbjct: 284 CEIE-DLHFHYAPNTKRPRI-YNDMIHIPSADNKMK 317


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,639,685
Number of Sequences: 5004
Number of extensions: 32813
Number of successful extensions: 100
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)