Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_E11
(367 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0261 + 24007790-24009098,24009191-24011118 33 0.069
05_04_0104 + 18021671-18021909,18022102-18022282,18022473-180225... 29 0.85
02_01_0407 - 2963907-2964063,2965158-2965311,2965427-2968527,296... 29 1.1
03_05_1125 + 30576951-30577010,30577163-30577285,30577393-305775... 29 1.5
04_04_0396 + 24915880-24916222,24916318-24916577,24916689-249167... 28 2.0
03_06_0073 + 31474832-31475284 27 3.4
11_06_0365 - 22742886-22744223 27 4.5
11_06_0362 - 22723104-22724441 27 4.5
05_04_0407 - 21040536-21041352,21041452-21042044 27 4.5
02_03_0406 + 18663986-18664059,18665082-18665405,18665499-186655... 27 6.0
02_01_0411 - 2998806-3000938 27 6.0
08_01_0527 + 4580599-4580818,4580933-4581806,4581891-4581955,458... 26 7.9
03_05_0778 - 27638380-27639906 26 7.9
03_04_0186 + 18215475-18215993,18216248-18216262,18216607-18216894 26 7.9
>04_04_0261 + 24007790-24009098,24009191-24011118
Length = 1078
Score = 33.1 bits (72), Expect = 0.069
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 118 LCPIWRQARPCHIWDGISSAKCGGVVRTS 32
L P WR A C +W+G+S GVV T+
Sbjct: 55 LLPSWRAATDCCLWEGVSCDAASGVVVTA 83
>05_04_0104 +
18021671-18021909,18022102-18022282,18022473-18022568,
18022632-18022672,18022761-18022833,18023036-18023749
Length = 447
Score = 29.5 bits (63), Expect = 0.85
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -2
Query: 156 WVFLLSIIPEFGICARYGDRLAPVTSG 76
W F+L+++ +G C GD + VT+G
Sbjct: 35 WSFVLAVVAVYGACQGVGDAVGGVTAG 61
>02_01_0407 -
2963907-2964063,2965158-2965311,2965427-2968527,
2968684-2968697
Length = 1141
Score = 29.1 bits (62), Expect = 1.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 121 NLCPIWRQARPCHIWDGISSAKCGGVVRTS 32
NL WR R C +W+GI+ + G V S
Sbjct: 53 NLSMSWRNDRNCCVWEGITCNRNGAVTDIS 82
>03_05_1125 +
30576951-30577010,30577163-30577285,30577393-30577552,
30577635-30577702,30577928-30578473,30578725-30579312,
30579392-30579604,30580227-30580388
Length = 639
Score = 28.7 bits (61), Expect = 1.5
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Frame = +2
Query: 8 VIPEGYAR*STNYTTTFRRAYSVPDVTG---ASLSPYRAQIPNSGMILSRKTQYHLTRPG 178
V G+ R +TN T+ +YS + + A+L AQIP+SGM L+ + + P
Sbjct: 285 VYSNGHQRSNTNSTSYGSNSYSAKNQSQRPTANLMGMHAQIPSSGMGLTSPSYHTRMYPD 344
Query: 179 DR 184
+R
Sbjct: 345 NR 346
>04_04_0396 +
24915880-24916222,24916318-24916577,24916689-24916784,
24916889-24917059,24917262-24917975
Length = 527
Score = 28.3 bits (60), Expect = 2.0
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = -2
Query: 159 YWVFLLSIIPEFGICARYGDRLAPVTSG 76
+W F+L+++ +G C GD + V +G
Sbjct: 35 HWSFVLAVVAVYGACQGVGDAVGGVAAG 62
>03_06_0073 + 31474832-31475284
Length = 150
Score = 27.5 bits (58), Expect = 3.4
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Frame = +2
Query: 50 TTFRRAYSVPDVTGASLSPYRAQIPNSGMILSRKTQYHLTR----PGDRTRDLRTYV 208
T F RA+ V YR GM L+ T+Y++ PGD R L YV
Sbjct: 32 TVFGRAHEVKLTAKVDGRVYRCIKVREGMFLTLATEYNMPALIGCPGDEPRMLTPYV 88
>11_06_0365 - 22742886-22744223
Length = 445
Score = 27.1 bits (57), Expect = 4.5
Identities = 13/52 (25%), Positives = 25/52 (48%)
Frame = -3
Query: 188 GFDPRVGSSDIGFFYSVSSRSLEFVPDMATGSPLSHLGRNKLGEMWWCSSYF 33
GF+ + D GFFY++ + D+ SP+ K+ + W+ S+ +
Sbjct: 229 GFEDFFHNDDDGFFYALCFDGSIYTLDLNGDSPIVRQITGKVPQRWYPSAMY 280
>11_06_0362 - 22723104-22724441
Length = 445
Score = 27.1 bits (57), Expect = 4.5
Identities = 13/52 (25%), Positives = 25/52 (48%)
Frame = -3
Query: 188 GFDPRVGSSDIGFFYSVSSRSLEFVPDMATGSPLSHLGRNKLGEMWWCSSYF 33
GF+ + D GFFY++ + D+ SP+ K+ + W+ S+ +
Sbjct: 229 GFEDFFHNDDDGFFYALCFDGSIYTLDLNGDSPIVRQITGKVPQRWYPSAMY 280
>05_04_0407 - 21040536-21041352,21041452-21042044
Length = 469
Score = 27.1 bits (57), Expect = 4.5
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -3
Query: 311 ALEL*SLLSYWYFIFTFILKNKN 243
AL LL+Y YF TF KNKN
Sbjct: 436 ALSALELLAYGYFAVTFKYKNKN 458
>02_03_0406 +
18663986-18664059,18665082-18665405,18665499-18665559,
18666136-18666282,18666368-18666492,18666619-18666648,
18666689-18666893,18667532-18667741,18667886-18667888,
18670034-18670942,18671239-18672069
Length = 972
Score = 26.6 bits (56), Expect = 6.0
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Frame = -1
Query: 229 ASVAQLYYIRSEVSGSIPGSGQVILGFSTQYHPGVWN-LCPIWRQARPCHIWDGISSAKC 53
++V L Y+ S S+P +L F + P N L WR C W+GI
Sbjct: 376 STVTLLEYVHIS-SFSLPEERLTLLRFLAELSPPHDNGLAASWRNRTDCCTWEGIICDVD 434
Query: 52 GGVVR 38
G V +
Sbjct: 435 GAVTK 439
>02_01_0411 - 2998806-3000938
Length = 710
Score = 26.6 bits (56), Expect = 6.0
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -1
Query: 106 WRQARPCHIWDGISSAKCGGVVRTS 32
WR C W+GI+ ++ G V+ S
Sbjct: 52 WRNGMDCCEWEGITCSEDGAVIEVS 76
>08_01_0527 +
4580599-4580818,4580933-4581806,4581891-4581955,
4582055-4582110,4582955-4583058,4583310-4583382,
4583474-4583654,4584537-4584622
Length = 552
Score = 26.2 bits (55), Expect = 7.9
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = +1
Query: 13 PRRLCEVKYELHHHISPSLFRPRCDRGEPVAISGTNSKLRDDTE 144
PRRL + ISP R R D EP +S K R D+E
Sbjct: 212 PRRLSRHDSKESQDISPPRRRTRHDSEEPQDLSPPRRKGRHDSE 255
>03_05_0778 - 27638380-27639906
Length = 508
Score = 26.2 bits (55), Expect = 7.9
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = -1
Query: 250 IKTKYITASVAQLYYIRSEVSGSIPGSGQVILGFSTQYH-PGVWNLCPIWRQARPCHIWD 74
+KT + A+V + R +V G +L + +H P + ++ WR+ PC+ W
Sbjct: 317 VKTDFAEAAVKGSF-CRLDVHGPCDQETSSLLSVAAAFHYPEILDVS--WRRDDPCNGWL 373
Query: 73 GI 68
GI
Sbjct: 374 GI 375
>03_04_0186 + 18215475-18215993,18216248-18216262,18216607-18216894
Length = 273
Score = 26.2 bits (55), Expect = 7.9
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = -1
Query: 109 IWRQARPCHIWDGIS 65
+W + PC WDG+S
Sbjct: 56 VWNSSTPCCSWDGVS 70
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,498,537
Number of Sequences: 37544
Number of extensions: 215734
Number of successful extensions: 550
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -