Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_E11
(367 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC113614-1|AAI13615.1| 1508|Homo sapiens gem (nuclear organelle)... 33 0.28
BC036894-1|AAH36894.1| 746|Homo sapiens GEMIN5 protein protein. 33 0.28
AY063750-1|AAL38980.1| 1508|Homo sapiens WD repeat protein Gemin... 33 0.28
AK074066-1|BAB84892.1| 1512|Homo sapiens FLJ00137 protein protein. 33 0.28
AK022748-1|BAB14222.1| 741|Homo sapiens protein ( Homo sapiens ... 33 0.28
BC114476-1|AAI14477.1| 785|Homo sapiens ANKRD28 protein protein. 31 0.86
BC113868-1|AAI13869.1| 782|Homo sapiens ANKRD28 protein protein. 31 0.86
BC106948-1|AAI06949.2| 785|Homo sapiens ANKRD28 protein protein. 31 0.86
AK126888-1|BAC86737.1| 687|Homo sapiens protein ( Homo sapiens ... 31 0.86
AB002377-1|BAA20833.2| 1059|Homo sapiens KIAA0379 protein protein. 31 0.86
BC024592-1|AAH24592.1| 729|Homo sapiens neurochondrin protein. 31 1.5
AC004865-1|AAD05029.1| 730|Homo sapiens unknown protein. 31 1.5
AB027514-2|BAA77831.1| 712|Homo sapiens neurochondrin-2 protein. 31 1.5
AB027514-1|BAA77830.1| 729|Homo sapiens neurochondrin-1 protein. 31 1.5
AB018740-1|BAA85385.2| 712|Homo sapiens neurochondrin-2 protein. 31 1.5
AB018739-1|BAA85384.2| 729|Homo sapiens neurochondrin-1 protein. 31 1.5
AB011179-1|BAA25533.1| 731|Homo sapiens KIAA0607 protein protein. 31 1.5
AB067066-1|BAC02104.1| 114|Homo sapiens immunoglobulin heavy ch... 28 8.0
>BC113614-1|AAI13615.1| 1508|Homo sapiens gem (nuclear organelle)
associated protein 5 protein.
Length = 1508
Score = 33.1 bits (72), Expect = 0.28
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -1
Query: 193 VSGSIPGSGQVILGFSTQYHPGVWNLCPIWRQARPCHIWD 74
V G + G + + GF+ +HPG +NLC IWD
Sbjct: 56 VIGELVGHTERVSGFTFSHHPGQYNLCATSSDDGTVKIWD 95
>BC036894-1|AAH36894.1| 746|Homo sapiens GEMIN5 protein protein.
Length = 746
Score = 33.1 bits (72), Expect = 0.28
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -1
Query: 193 VSGSIPGSGQVILGFSTQYHPGVWNLCPIWRQARPCHIWD 74
V G + G + + GF+ +HPG +NLC IWD
Sbjct: 56 VIGELVGHTERVSGFTFSHHPGQYNLCATSSDDGTVKIWD 95
>AY063750-1|AAL38980.1| 1508|Homo sapiens WD repeat protein Gemin5
protein.
Length = 1508
Score = 33.1 bits (72), Expect = 0.28
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -1
Query: 193 VSGSIPGSGQVILGFSTQYHPGVWNLCPIWRQARPCHIWD 74
V G + G + + GF+ +HPG +NLC IWD
Sbjct: 56 VIGELVGHTERVSGFTFSHHPGQYNLCATSSDDGTVKIWD 95
>AK074066-1|BAB84892.1| 1512|Homo sapiens FLJ00137 protein protein.
Length = 1512
Score = 33.1 bits (72), Expect = 0.28
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -1
Query: 193 VSGSIPGSGQVILGFSTQYHPGVWNLCPIWRQARPCHIWD 74
V G + G + + GF+ +HPG +NLC IWD
Sbjct: 60 VIGELVGHTERVSGFTFSHHPGQYNLCATSSDDGTVKIWD 99
>AK022748-1|BAB14222.1| 741|Homo sapiens protein ( Homo sapiens
cDNA FLJ12686 fis, clone NT2RM4002527, weakly similar to
VEGETATIBLE INCOMPATIBILITY PROTEIN HET-E-1. ).
Length = 741
Score = 33.1 bits (72), Expect = 0.28
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -1
Query: 193 VSGSIPGSGQVILGFSTQYHPGVWNLCPIWRQARPCHIWD 74
V G + G + + GF+ +HPG +NLC IWD
Sbjct: 56 VIGELVGHTERVSGFTFSHHPGQYNLCATSSDDGTVKIWD 95
>BC114476-1|AAI14477.1| 785|Homo sapiens ANKRD28 protein protein.
Length = 785
Score = 31.5 bits (68), Expect = 0.86
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = -2
Query: 120 ICARYGDRL---APVTSGTE*ARRNVVV*FVLHLA*PSGITSC 1
I ARYG L +TSG + A+R + F LHLA SG + C
Sbjct: 378 IAARYGHELLINTLITSGADTAKRGIHGMFPLHLAALSGFSDC 420
>BC113868-1|AAI13869.1| 782|Homo sapiens ANKRD28 protein protein.
Length = 782
Score = 31.5 bits (68), Expect = 0.86
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = -2
Query: 120 ICARYGDRL---APVTSGTE*ARRNVVV*FVLHLA*PSGITSC 1
I ARYG L +TSG + A+R + F LHLA SG + C
Sbjct: 375 IAARYGHELLINTLITSGADTAKRGIHGMFPLHLAALSGFSDC 417
>BC106948-1|AAI06949.2| 785|Homo sapiens ANKRD28 protein protein.
Length = 785
Score = 31.5 bits (68), Expect = 0.86
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = -2
Query: 120 ICARYGDRL---APVTSGTE*ARRNVVV*FVLHLA*PSGITSC 1
I ARYG L +TSG + A+R + F LHLA SG + C
Sbjct: 378 IAARYGHELLINTLITSGADTAKRGIHGMFPLHLAALSGFSDC 420
>AK126888-1|BAC86737.1| 687|Homo sapiens protein ( Homo sapiens
cDNA FLJ44940 fis, clone BRAMY4000915, weakly similar
to Ankyrin 1. ).
Length = 687
Score = 31.5 bits (68), Expect = 0.86
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = -2
Query: 120 ICARYGDRL---APVTSGTE*ARRNVVV*FVLHLA*PSGITSC 1
I ARYG L +TSG + A+R + F LHLA SG + C
Sbjct: 378 IAARYGHELLINTLITSGADTAKRGIHGMFPLHLAALSGFSDC 420
>AB002377-1|BAA20833.2| 1059|Homo sapiens KIAA0379 protein protein.
Length = 1059
Score = 31.5 bits (68), Expect = 0.86
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = -2
Query: 120 ICARYGDRL---APVTSGTE*ARRNVVV*FVLHLA*PSGITSC 1
I ARYG L +TSG + A+R + F LHLA SG + C
Sbjct: 351 IAARYGHELLINTLITSGADTAKRGIHGMFPLHLAALSGFSDC 393
>BC024592-1|AAH24592.1| 729|Homo sapiens neurochondrin protein.
Length = 729
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = -1
Query: 226 SVAQLYYIRSEVSGSIPGSGQVILGFSTQYHPGVW-NLCPIW 104
+ A L+ +S V+ + PGS Q +L S +Y G+W +L +W
Sbjct: 597 AAAILFLSQSHVARATPGSDQAVLALSPEYE-GIWADLQELW 637
>AC004865-1|AAD05029.1| 730|Homo sapiens unknown protein.
Length = 730
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = -1
Query: 226 SVAQLYYIRSEVSGSIPGSGQVILGFSTQYHPGVW-NLCPIW 104
+ A L+ +S V+ + PGS Q +L S +Y G+W +L +W
Sbjct: 598 AAAILFLSQSHVARATPGSDQAVLALSPEYE-GIWADLQELW 638
>AB027514-2|BAA77831.1| 712|Homo sapiens neurochondrin-2 protein.
Length = 712
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = -1
Query: 226 SVAQLYYIRSEVSGSIPGSGQVILGFSTQYHPGVW-NLCPIW 104
+ A L+ +S V+ + PGS Q +L S +Y G+W +L +W
Sbjct: 580 AAAILFLSQSHVARATPGSDQAVLALSPEYE-GIWADLQELW 620
>AB027514-1|BAA77830.1| 729|Homo sapiens neurochondrin-1 protein.
Length = 729
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = -1
Query: 226 SVAQLYYIRSEVSGSIPGSGQVILGFSTQYHPGVW-NLCPIW 104
+ A L+ +S V+ + PGS Q +L S +Y G+W +L +W
Sbjct: 597 AAAILFLSQSHVARATPGSDQAVLALSPEYE-GIWADLQELW 637
>AB018740-1|BAA85385.2| 712|Homo sapiens neurochondrin-2 protein.
Length = 712
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = -1
Query: 226 SVAQLYYIRSEVSGSIPGSGQVILGFSTQYHPGVW-NLCPIW 104
+ A L+ +S V+ + PGS Q +L S +Y G+W +L +W
Sbjct: 580 AAAILFLSQSHVARATPGSDQAVLALSPEYE-GIWADLQELW 620
>AB018739-1|BAA85384.2| 729|Homo sapiens neurochondrin-1 protein.
Length = 729
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = -1
Query: 226 SVAQLYYIRSEVSGSIPGSGQVILGFSTQYHPGVW-NLCPIW 104
+ A L+ +S V+ + PGS Q +L S +Y G+W +L +W
Sbjct: 597 AAAILFLSQSHVARATPGSDQAVLALSPEYE-GIWADLQELW 637
>AB011179-1|BAA25533.1| 731|Homo sapiens KIAA0607 protein protein.
Length = 731
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = -1
Query: 226 SVAQLYYIRSEVSGSIPGSGQVILGFSTQYHPGVW-NLCPIW 104
+ A L+ +S V+ + PGS Q +L S +Y G+W +L +W
Sbjct: 599 AAAILFLSQSHVARATPGSDQAVLALSPEYE-GIWADLQELW 639
>AB067066-1|BAC02104.1| 114|Homo sapiens immunoglobulin heavy chain
VHDJ region protein.
Length = 114
Score = 28.3 bits (60), Expect = 8.0
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 250 IKTKYITASVAQLYYIRSEVSGSIPGSGQVI 158
+K +TA+ +YY S SGS PG G ++
Sbjct: 80 LKLSSVTAADTAVYYCASLYSGSSPGQGTLV 110
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,907,559
Number of Sequences: 237096
Number of extensions: 1298796
Number of successful extensions: 5879
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 5851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5879
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2306171440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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