Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_E11
         (367 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41559-1|AAC24260.1|  373|Caenorhabditis elegans Hypothetical pr...    28   2.4  
Z81143-9|CAB03520.1|  440|Caenorhabditis elegans Hypothetical pr...    27   3.1  
Z75713-10|CAB00057.1|  440|Caenorhabditis elegans Hypothetical p...    27   3.1  
Z92849-8|CAB07427.3|  523|Caenorhabditis elegans Hypothetical pr...    26   7.2  
Z81038-11|CAB02761.1|  230|Caenorhabditis elegans Hypothetical p...    26   9.5  

>U41559-1|AAC24260.1|  373|Caenorhabditis elegans Hypothetical
           protein C26B2.8 protein.
          Length = 373

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 153 VFLLSIIPEFGICARYGDRLAPVTSGTE*AR 61
           VF++ ++P  G+CARY   L    S ++  R
Sbjct: 60  VFIMLLLPAAGLCARYNSHLVKGWSNSDCVR 90


>Z81143-9|CAB03520.1|  440|Caenorhabditis elegans Hypothetical
           protein ZK265.8 protein.
          Length = 440

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 133 PGVWNLCPIWRQARPCHIWDGISSAKCGGVVR 38
           PGVW  C +    +   + DGI+   CG + R
Sbjct: 256 PGVWFFCQVQMCMKKHGMCDGITPPSCGSMSR 287


>Z75713-10|CAB00057.1|  440|Caenorhabditis elegans Hypothetical
           protein ZK265.8 protein.
          Length = 440

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 133 PGVWNLCPIWRQARPCHIWDGISSAKCGGVVR 38
           PGVW  C +    +   + DGI+   CG + R
Sbjct: 256 PGVWFFCQVQMCMKKHGMCDGITPPSCGSMSR 287


>Z92849-8|CAB07427.3|  523|Caenorhabditis elegans Hypothetical
           protein H12D21.10 protein.
          Length = 523

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -1

Query: 241 KYITASVAQLYYIRSEVSGSIPGSGQVILGFSTQYH 134
           KY T   A++  IRS+  G  P SG+  L F+  YH
Sbjct: 443 KYYTWPEAKINLIRSDEEGKHPQSGEKHLKFA-NYH 477


>Z81038-11|CAB02761.1|  230|Caenorhabditis elegans Hypothetical
           protein C25A1.2 protein.
          Length = 230

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
 Frame = +1

Query: 52  HISPSLFRPRCDRGEPVAISGTNSKLRDDTE*KNPISLD-----PTRGSNPRPQN 201
           HI P  F+ R +      +S +N  L+D      P+S D     PT    P+PQ+
Sbjct: 27  HILPFTFQLRMEEILRQFLSSSNHSLKDSPFPMIPLSFDTSIMSPTECQQPKPQH 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,102,382
Number of Sequences: 27780
Number of extensions: 190704
Number of successful extensions: 456
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 514188384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)