Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_E10
(416 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S... 116 2e-27
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz... 68 5e-13
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha... 37 0.001
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po... 31 0.054
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 31 0.095
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb... 27 0.88
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop... 27 0.88
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 1.2
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce... 25 3.6
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 3.6
SPAC2F3.18c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 3.6
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom... 25 4.7
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 25 4.7
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo... 25 6.2
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 24 8.2
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch... 24 8.2
>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 116 bits (278), Expect = 2e-27
Identities = 65/141 (46%), Positives = 85/141 (60%), Gaps = 12/141 (8%)
Frame = +2
Query: 26 VFYGSQTGTAEEFAGRLAKEG-IRYRMKGMVADPEECDMEELTKLQEISNSLAVFCMATY 202
VF+GSQTGTAE+FA R + E + + MV D E D+ +L + L VF +ATY
Sbjct: 55 VFFGSQTGTAEDFAYRFSTEAKANFNLTNMVFDLENYDLTDLDNFDR--SKLLVFFLATY 112
Query: 203 GEGDPTDNSMEFYEWLKNGDPDLT-----------GLNYAVFGLGNKTYEHYNAVAIYLD 349
GEG+PTDN+ F + L+ D + G+ YA+FGLGN TYE+YNA+A +D
Sbjct: 113 GEGEPTDNAEAFLQLLEGDDTVFSSGKGIEDTPFEGIRYAIFGLGNHTYEYYNAMAKKVD 172
Query: 350 KRLEELGATRVFELGLGDDDA 412
+ LGATRV LGLGDD A
Sbjct: 173 AAMTRLGATRVGNLGLGDDAA 193
>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1473
Score = 68.1 bits (159), Expect = 5e-13
Identities = 46/140 (32%), Positives = 67/140 (47%), Gaps = 7/140 (5%)
Frame = +2
Query: 8 AGRSLVVFYGSQTGTAEEFAGRLAKEGIRYRMKGMVADPEECDMEELTKLQEISNSLAVF 187
+G L + + S GTAE A RL K + ++ +EEL + + V
Sbjct: 724 SGPPLTILFASDGGTAENVAKRLQNRASARGSKCKIMAMDDFPIEELGNEKNV-----VV 778
Query: 188 CMATYGEGDPTDNSMEFYEWLKNGDPDLTGLNYAVFGLGNKTY-------EHYNAVAIYL 346
++T G+G+ N EF+E +K D +L+ L Y VFG G+ Y +YN L
Sbjct: 779 LVSTAGQGEFPQNGREFWEAIKGADLNLSELKYGVFGFGDYEYWPRKEDKIYYNRPGKQL 838
Query: 347 DKRLEELGATRVFELGLGDD 406
D R ELGA + LGLG+D
Sbjct: 839 DARFVELGAAPLVTLGLGND 858
>SPCC1020.08 |||wybutosine biosynthesis protein
Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 688
Score = 36.7 bits (81), Expect = 0.001
Identities = 41/137 (29%), Positives = 70/137 (51%), Gaps = 11/137 (8%)
Frame = +2
Query: 20 LVVFYGSQTGTAEEFAGRLAKE--GIRYRMKGMVADPEECDMEELTKLQEISNSLAVFCM 193
L VFY + GTAE +A ++ +E + R + + + D+ E + N++ + +
Sbjct: 91 LCVFYSTLGGTAERYAKQVHEELSSLLQRDDIQLLNLDYVDLSEYF-VSCPENAIYLVVL 149
Query: 194 ATYGEGDPTD---NSME--FYEWLKNGDPDLTGLN-YAVFGLG---NKTYEHYNAVAIYL 346
+Y D +S++ F ++ DP L GL+ YAVFGLG N + + AI
Sbjct: 150 PSYEIESSIDYYLSSLQESFSDFRVPKDP-LHGLSGYAVFGLGDMENYPGDKFCYQAIQA 208
Query: 347 DKRLEELGATRVFELGL 397
DK +++LGA R+ LG+
Sbjct: 209 DKWIKKLGARRLAPLGV 225
>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 558
Score = 31.5 bits (68), Expect = 0.054
Identities = 21/72 (29%), Positives = 35/72 (48%)
Frame = +2
Query: 20 LVVFYGSQTGTAEEFAGRLAKEGIRYRMKGMVADPEECDMEELTKLQEISNSLAVFCMAT 199
+ + YGS+TGTAE A L + R +V ++ ++E L + + VF +T
Sbjct: 6 IYILYGSETGTAEGLAESLFRSLTRMGYDVLVNSMDDFNLENLLRPLQ-----CVFICST 60
Query: 200 YGEGDPTDNSME 235
G+G+ N E
Sbjct: 61 TGQGEMPLNMRE 72
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 30.7 bits (66), Expect = 0.095
Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 4/122 (3%)
Frame = -3
Query: 408 SSSPNPSSNTRVAPSSSSLLSKYIATAL*CSY----VLFPKPKTA*FSPVRSGSPFFNHS 241
SSSP SS++ PSSSSL+S Y A+ ++ + +A + V S + S
Sbjct: 687 SSSPVASSSSSPIPSSSSLVSTYSASLSNITHSSLSLTAMSSSSAIPTSVNSSTLITASS 746
Query: 240 *NSMELSVGSPSP*VAIQKTANEFDIXXXXXXXXXXXXXXSATIPFILYLMPSLARRPAN 61
N++ S+ S S V+ +N S+T+ LYL S +R +
Sbjct: 747 SNTLLSSITSSSAIVSSTTVSNISSNLPSATASSQSQLTNSSTLATSLYLSSSSSRTIST 806
Query: 60 SS 55
SS
Sbjct: 807 SS 808
>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1095
Score = 27.5 bits (58), Expect = 0.88
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +2
Query: 152 KLQEISNSLAVFCMATYGE--GDPTDNSMEFYEWLKNGDPD 268
K + ++ L + C+ + GDP D + E EWL D D
Sbjct: 301 KSSDYTDQLVLQCLLLMTDVAGDPEDEAEELQEWLNTDDLD 341
>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
pyrophosphate phosphatase fusion 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 27.5 bits (58), Expect = 0.88
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 23 VVFYGSQTGTAEEFAGRLAKEGIRYRMKGMVADPEECDME 142
V+F G + T +F G++ E I Y +K + P D+E
Sbjct: 428 VMFTGRELDTFMQFGGQVVNEFINYVVKVSLKYPRPADIE 467
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 27.1 bits (57), Expect = 1.2
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = -3
Query: 411 ASSSPNPSSNTRVAPSSSSLLSKYIATAL*CSYVLFPKPKTA*FSPVRS 265
A++S + SS++ + SSSS+LS ATA+ S P ++ SP S
Sbjct: 29 AAASTSLSSSSVIPSSSSSMLSSSSATAISSSSSSSPLSSSSFTSPASS 77
>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 610
Score = 25.4 bits (53), Expect = 3.6
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 263 PDLTGLNYAVFGLGNKTYEHYNAVAIYLDKR 355
PDL LN + GN+ + V++YL++R
Sbjct: 212 PDLQALNTWMTNEGNQANDEMEDVSLYLEER 242
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.4 bits (53), Expect = 3.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -3
Query: 408 SSSPNPSSNTRVAPSSSSLLS 346
SS P+P SN +P+SSS+ S
Sbjct: 1254 SSVPSPHSNASPSPTSSSMAS 1274
>SPAC2F3.18c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 110
Score = 25.4 bits (53), Expect = 3.6
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 123 LKNVIWRNSRNCKKYQI 173
L N+ +RNS NC KY +
Sbjct: 78 LMNIFFRNSENCFKYSM 94
>SPBC16C6.06 |pep1|vps10|sorting receptor for
CPY|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1466
Score = 25.0 bits (52), Expect = 4.7
Identities = 10/42 (23%), Positives = 18/42 (42%)
Frame = +2
Query: 2 HEAGRSLVVFYGSQTGTAEEFAGRLAKEGIRYRMKGMVADPE 127
H V+F ++ + G++ K + Y G +DPE
Sbjct: 143 HAKNPDYVIFNNQYCSSSGTWVGKICKPDLYYTKDGFQSDPE 184
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 25.0 bits (52), Expect = 4.7
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +2
Query: 83 EGIRYRMKGMVADPEECDMEELTKL-QEISNSLAVFCMATYGEGDPTDNSME 235
E ++YR++G+ DP E + L EI A + E PTD+ ME
Sbjct: 141 ESLKYRLQGVTTDPSLWGHEYVRHLASEIEEEFA----SRQEEEAPTDDLME 188
>SPBC215.01 ||SPBC3B9.20|GTPase activating
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 24.6 bits (51), Expect = 6.2
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -1
Query: 251 LTIHKTPWNCQLGLLRHRLPYKKRLTNLIFL 159
L+I PW L L LPY RL + FL
Sbjct: 376 LSIISLPWFLSLFLCTMPLPYAFRLLDFFFL 406
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 24.2 bits (50), Expect = 8.2
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -2
Query: 127 FRISHHSFHSVSYAFLS*TPGEFLSRSRL 41
F ISH+ +VS + L GEF++ SRL
Sbjct: 332 FEISHNVGRTVSSSGLYRIRGEFMAASRL 360
>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 752
Score = 24.2 bits (50), Expect = 8.2
Identities = 13/21 (61%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = -3
Query: 396 NPSSNTRVAPSSSSLLS-KYI 337
N SN + P+SSSLLS KYI
Sbjct: 270 NGKSNPTIDPNSSSLLSEKYI 290
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,836,733
Number of Sequences: 5004
Number of extensions: 38771
Number of successful extensions: 143
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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