Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_E10
(416 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0889 + 8753877-8754236,8754995-8755054,8755174-8755250,875... 113 7e-26
09_06_0260 - 21911358-21911438,21911715-21911828,21911911-219120... 111 2e-25
04_04_1410 + 33363784-33364086,33364221-33364280,33364388-333644... 111 2e-25
01_06_0610 - 30587269-30587717,30587996-30588212,30588363-305884... 83 7e-17
03_06_0136 + 31933843-31934715,31934906-31935021,31935233-319354... 55 3e-08
01_05_0687 + 24288648-24292746,24293737-24293844,24294333-242944... 29 1.1
02_05_0902 + 32620668-32621209,32621847-32622258,32622471-326226... 28 2.6
08_02_1599 - 28132748-28132776,28132855-28133113 28 3.5
09_04_0382 + 17135554-17136468,17136762-17136833,17137675-171377... 27 4.6
03_01_0573 + 4230875-4231432 27 4.6
03_03_0130 - 14699658-14699723,14699828-14700109,14700444-147005... 27 6.0
06_03_0253 + 18753901-18754278,18754873-18754968,18755167-187553... 27 8.0
01_01_0663 - 5059881-5060119,5060682-5060898,5061008-5061838,506... 27 8.0
>08_01_0889 +
8753877-8754236,8754995-8755054,8755174-8755250,
8755481-8755622,8755736-8755772,8755852-8755921,
8756021-8756212,8756321-8756413,8756545-8756773,
8756861-8756944,8757041-8757192,8757279-8757375,
8757576-8757725,8757813-8757890,8757982-8758104,
8758169-8758315,8758418-8758472,8758807-8758874
Length = 737
Score = 113 bits (271), Expect = 7e-26
Identities = 60/138 (43%), Positives = 86/138 (62%), Gaps = 6/138 (4%)
Frame = +2
Query: 14 RSLVVFYGSQTGTAEEFAGRLAKEGIRYRMKGM--VADPEECDMEELTKLQEISNS-LAV 184
+ + VF+G+QTGTAE FA LA+E K + V D +E ME+ + + +++
Sbjct: 102 KRVTVFFGTQTGTAEGFAKALAEEAKSRYDKAIFKVVDLDEYAMEDEEYEERLKKEKISL 161
Query: 185 FCMATYGEGDPTDNSMEFYEWLKNGDPDLTGLN---YAVFGLGNKTYEHYNAVAIYLDKR 355
F +ATYG+G+PTDN+ FY+W G+ LN YA+FGLGN+ YEH+N VA +D+
Sbjct: 162 FFVATYGDGEPTDNAARFYKWFTEGNERGVWLNDFQYAIFGLGNRQYEHFNKVAKVVDEL 221
Query: 356 LEELGATRVFELGLGDDD 409
L E G R+ +GLGDDD
Sbjct: 222 LVEQGGKRLVPVGLGDDD 239
>09_06_0260 -
21911358-21911438,21911715-21911828,21911911-21912033,
21912342-21912419,21912498-21912647,21913505-21913601,
21913679-21913860,21913899-21913982,21914243-21914303,
21914414-21914506,21914588-21914782,21914937-21915006,
21915536-21915572,21915654-21915737,21915828-21915885,
21916008-21916084,21916185-21916244,21916325-21916687
Length = 668
Score = 111 bits (268), Expect = 2e-25
Identities = 63/140 (45%), Positives = 87/140 (62%), Gaps = 7/140 (5%)
Frame = +2
Query: 11 GRSLV-VFYGSQTGTAEEFAGRLAKEG-IRY-RMKGMVADPEECDMEELTKLQEISNSL- 178
GR V VF+G+QTGTAE FA LA+E RY + V D +E ++ Q++ +
Sbjct: 101 GRQRVAVFFGTQTGTAEGFAKALAEEAKSRYDKAVFKVLDLDEYAADDEEYEQKLKKEII 160
Query: 179 AVFCMATYGEGDPTDNSMEFYEWLKNGDPD---LTGLNYAVFGLGNKTYEHYNAVAIYLD 349
A+F +ATYG+G+PTDN+ FY+W G+ L+ L + VFGLGN+ YEH+N V +D
Sbjct: 161 ALFFVATYGDGEPTDNAARFYKWFGEGNERGEWLSNLRFGVFGLGNRQYEHFNKVGKVVD 220
Query: 350 KRLEELGATRVFELGLGDDD 409
+ L E G R+ LGLGDDD
Sbjct: 221 QLLAEQGGKRIVPLGLGDDD 240
>04_04_1410 +
33363784-33364086,33364221-33364280,33364388-33364464,
33365032-33365089,33365179-33365262,33365358-33365394,
33365855-33365924,33366655-33366849,33366947-33367039,
33367187-33367418,33367515-33367598,33368205-33368301,
33368510-33368577,33368662-33368739,33368823-33368945,
33369059-33369172,33369288-33369368
Length = 617
Score = 111 bits (267), Expect = 2e-25
Identities = 59/138 (42%), Positives = 85/138 (61%), Gaps = 6/138 (4%)
Frame = +2
Query: 14 RSLVVFYGSQTGTAEEFAGRLAKEG-IRYRMKGM-VADPEECDMEELTKLQEI-SNSLAV 184
+ + VF+G+QTGTAE FA +A+E RY V D ++ E+ +++ ++ +
Sbjct: 83 KRVTVFFGTQTGTAEGFAKAMAEEARARYEKAVFKVVDLDDYAAEDEEYEEKLRKETIVL 142
Query: 185 FCMATYGEGDPTDNSMEFYEWLKNGDPD---LTGLNYAVFGLGNKTYEHYNAVAIYLDKR 355
+ATYG+G+PTDN+ FY+W G L L YAVFGLGN+ YEH+N VA +D+
Sbjct: 143 LFLATYGDGEPTDNAARFYKWFTEGKEKEVWLKDLKYAVFGLGNRQYEHFNKVAKVVDEL 202
Query: 356 LEELGATRVFELGLGDDD 409
LEE G R+ +GLGDDD
Sbjct: 203 LEEQGGKRLVPVGLGDDD 220
>01_06_0610 -
30587269-30587717,30587996-30588212,30588363-30588482,
30589092-30589202,30589300-30589374,30589940-30590031,
30590121-30590302,30590479-30590570,30591179-30591283,
30591374-30591451,30591553-30591705
Length = 557
Score = 83.4 bits (197), Expect = 7e-17
Identities = 53/136 (38%), Positives = 73/136 (53%), Gaps = 3/136 (2%)
Frame = +2
Query: 8 AGRSLVVFYGSQTGTAEEFAGRLAKEGIRYRMKGMVADPEECDMEELTKLQEISNSLAVF 187
A L+V Y S+TG A + A R+ ++ R G + M+ S VF
Sbjct: 7 ADSRLLVIYASETGNAMDAAERVGRQAER----GGCPAVDVLPMDSFDPSCLPSERFVVF 62
Query: 188 CMATYGEGDPTDNSMEFYEWL--KN-GDPDLTGLNYAVFGLGNKTYEHYNAVAIYLDKRL 358
++T G+GDP D+ F+ +L KN G L G+ YAVFGLG+ Y+ YN A LDKRL
Sbjct: 63 VVSTTGQGDPPDSMKGFWRYLLKKNLGARWLEGVRYAVFGLGDSGYQKYNFAAKKLDKRL 122
Query: 359 EELGATRVFELGLGDD 406
LGA + ++GLGDD
Sbjct: 123 LHLGAEPIIQVGLGDD 138
>03_06_0136 +
31933843-31934715,31934906-31935021,31935233-31935408,
31935846-31936036,31936119-31936205,31936304-31936461,
31936555-31936765,31936856-31937005
Length = 653
Score = 54.8 bits (126), Expect = 3e-08
Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 8/136 (5%)
Frame = +2
Query: 26 VFYGSQTGTAEEFAGRLAKEGIRYRMKGMVADPEECDMEELTKLQEISNSLAVFCMATYG 205
+ Y S TGT++ A L++ + AD D ++L L L + + T+
Sbjct: 58 LLYASATGTSKALAAGLSRRLAEAGVTAHPADAAAFDPDDLPSLP-----LLLLVLPTHD 112
Query: 206 EGDPTDNSMEFYEWLKNGDPD-------LTGLNYAVFGLGNKTY-EHYNAVAIYLDKRLE 361
G P + WL+ D L+GL +AVFG+G++ Y E +NA A + L
Sbjct: 113 GGAPPPAAAFLARWLEESAADFRAGAALLSGLRFAVFGVGSRAYGETFNAAARSFSRWLR 172
Query: 362 ELGATRVFELGLGDDD 409
LGA V +G GD D
Sbjct: 173 ALGAAEVVAVGEGDVD 188
>01_05_0687 +
24288648-24292746,24293737-24293844,24294333-24294442,
24295208-24295282
Length = 1463
Score = 29.5 bits (63), Expect = 1.1
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = +2
Query: 119 DPEECDMEELTKLQEISNSLAVFCMATYGEGDPTDNSMEFYEWLKNGDPD 268
DP+ +++ + +QE + A+ + TYGE D + S+ L++G+PD
Sbjct: 597 DPDAAEVDVVVGMQEQAAGSALAMLVTYGETDTSAVSVS--PVLESGEPD 644
Score = 26.6 bits (56), Expect = 8.0
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +2
Query: 119 DPEECDMEELTKLQEISNSLAVFCMATYGEGDPTDNSMEFYEWLKNGDPDLTGLNYAV 292
DP+ +++ + +QE + + TY E D T S+ L +GDPD ++ V
Sbjct: 552 DPDAAEIDVVAGMQEEAPGSTLAMEVTYRETDATAASVS--PVLDSGDPDAAEVDVVV 607
>02_05_0902 +
32620668-32621209,32621847-32622258,32622471-32622675,
32622712-32622806,32622945-32623557,32623652-32623820,
32624392-32624749,32625226-32625336,32626207-32626561,
32627262-32627484,32627837-32628058,32628628-32628781
Length = 1152
Score = 28.3 bits (60), Expect = 2.6
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +2
Query: 137 MEELTKLQEISNSLAVFCMATYGEGDPTDNSMEFYEWLKNGDPD 268
+E+ +L + L ++ + YGE D T N ++ +E + PD
Sbjct: 342 LEKAVELNPDNEELLLYLLKAYGERDSTQNLLDKWEQILMKHPD 385
>08_02_1599 - 28132748-28132776,28132855-28133113
Length = 95
Score = 27.9 bits (59), Expect = 3.5
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -1
Query: 107 LSFCILCLP*LDARRIPQ 54
L FC LCLP L + R+PQ
Sbjct: 17 LFFCCLCLPPLSSLRVPQ 34
>09_04_0382 +
17135554-17136468,17136762-17136833,17137675-17137704,
17138744-17138817,17140022-17140367
Length = 478
Score = 27.5 bits (58), Expect = 4.6
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -3
Query: 282 FSPVRSGSPFFNHS*NSMELSVGSPSP*VAIQKTANEFD 166
F+P+ G P + + VG P VA+Q N+FD
Sbjct: 208 FAPLGMGDPALGNGLMPRAVPVGLPGAAVAMQTAVNQFD 246
>03_01_0573 + 4230875-4231432
Length = 185
Score = 27.5 bits (58), Expect = 4.6
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 20 LVVFYGSQTGTAEEFAGRLAKEGIRYRMKGMVADPEE 130
L +FYG + E+F A E +R GM A P +
Sbjct: 73 LTIFYGGRMVVFEDFPADKAAEVMRMASSGMAAAPAQ 109
>03_03_0130 -
14699658-14699723,14699828-14700109,14700444-14700545,
14701038-14701385
Length = 265
Score = 27.1 bits (57), Expect = 6.0
Identities = 17/43 (39%), Positives = 26/43 (60%)
Frame = -3
Query: 399 PNPSSNTRVAPSSSSLLSKYIATAL*CSYVLFPKPKTA*FSPV 271
P PS+++ A SS S LSK + AL + +P+ +T+ F PV
Sbjct: 16 PLPSTSSNPASSSLSFLSKPLLPAL--AVAGWPRRRTSPFVPV 56
>06_03_0253 +
18753901-18754278,18754873-18754968,18755167-18755376,
18756028-18756093,18756379-18756576,18756616-18756810,
18756968-18757014,18757147-18757234,18757331-18757681,
18758593-18759123
Length = 719
Score = 26.6 bits (56), Expect = 8.0
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 122 PEECDMEELTKLQEISN 172
PE+CD EE+T Q +SN
Sbjct: 462 PEDCDCEEITFKQALSN 478
>01_01_0663 -
5059881-5060119,5060682-5060898,5061008-5061838,
5063560-5064120
Length = 615
Score = 26.6 bits (56), Expect = 8.0
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +2
Query: 254 NGDPDLTGLNYAVFGLGNKTYEHYNAVAI 340
NG L L VFGLGNK Y+ VA+
Sbjct: 444 NGFIMLVSLELTVFGLGNKRKFLYDVVAL 472
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,691,833
Number of Sequences: 37544
Number of extensions: 250001
Number of successful extensions: 570
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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