Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_E09
(567 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 188 4e-49
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 188 7e-49
SPBC21.03c |||DUF55 family protein|Schizosaccharomyces pombe|chr... 29 0.63
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 1.9
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 2.5
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 26 4.4
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 25 5.9
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ... 25 5.9
SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces ... 25 5.9
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni... 25 7.7
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 25 7.7
SPCC1753.03c |rec7||meiotic recombination protein Rec7 |Schizosa... 25 7.7
>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 188 bits (459), Expect = 4e-49
Identities = 90/181 (49%), Positives = 126/181 (69%), Gaps = 2/181 (1%)
Frame = +1
Query: 13 KTKQAVIFLRRINAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKGLTRAFR 192
KTK+AV L+ I A+ DV+KV S++LRAGKGK+RNRR VQR+GPL+++N+D G+ +AFR
Sbjct: 163 KTKEAVALLKEIKAYRDVVKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDAGIVKAFR 222
Query: 193 NIPGIEMXXXXXXXXXXXAPGGHLGRFIIWTKSAFDRLDPLFGSWKTPSKEKKNFNLPQP 372
NIPG+E+ APGGHLGRF+IWTKSAF LD +FGS ++ KKN+ LP+
Sbjct: 223 NIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEAAQLKKNYFLPEN 282
Query: 373 KMANTDLSRLLKSEEIRKVLRAPN-KRVVRA-TRKLNPLTNTKAMLKLNPYAAVLRRKAV 546
++N D++RL+ S+EI+ +++A RV RA +K NPL N + +LNPYA +
Sbjct: 283 IISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLARLNPYAKAYKANVK 342
Query: 547 L 549
L
Sbjct: 343 L 343
>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 188 bits (457), Expect = 7e-49
Identities = 89/172 (51%), Positives = 124/172 (72%), Gaps = 2/172 (1%)
Frame = +1
Query: 13 KTKQAVIFLRRINAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKGLTRAFR 192
KTK+AV L+ I A+ DV+KV S++LRAGKGK+RNRR VQR+GPL+++N+D G+ +AFR
Sbjct: 163 KTKEAVALLKEIKAYRDVIKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDTGIVKAFR 222
Query: 193 NIPGIEMXXXXXXXXXXXAPGGHLGRFIIWTKSAFDRLDPLFGSWKTPSKEKKNFNLPQP 372
NIPG+E+ APGGHLGRF+IWTKSAF LD +FGS ++ KKN+ LP+
Sbjct: 223 NIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEVAQLKKNYFLPEN 282
Query: 373 KMANTDLSRLLKSEEIRKVLRAPN-KRVVRA-TRKLNPLTNTKAMLKLNPYA 522
++N D++RL+ S+EI+ +++A RV RA +K NPL N + +LNPYA
Sbjct: 283 IISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLSRLNPYA 334
>SPBC21.03c |||DUF55 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 239
Score = 28.7 bits (61), Expect = 0.63
Identities = 18/60 (30%), Positives = 35/60 (58%)
Frame = +1
Query: 388 DLSRLLKSEEIRKVLRAPNKRVVRATRKLNPLTNTKAMLKLNPYAAVLRRKAVLEQVRRN 567
+LS+ + EEI K ++V + RKLN L++ + K +PY+++ A L+ ++R+
Sbjct: 169 ELSKQPEPEEIIKARLQEEEKVAKRKRKLN-LSDGENKAK-SPYSSISENDASLDIIKRS 226
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.1 bits (57), Expect = 1.9
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +1
Query: 328 KTPSKEKKNFNLPQPKMANTDLSRLLKSEEIRKVLRAPNKRVVRATRKLNP 480
KTPS EK+ P P + N D L +E V + P+ + TR + P
Sbjct: 586 KTPSPEKQKVLSPPPIITNFDKETLASNEAHEAVPQKPS--APQVTRLMAP 634
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 26.6 bits (56), Expect = 2.5
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 348 EELQPAPAEDGQHRPQPSAEVRRDPQGPARAQQ 446
EE+Q ED H + E+ R + P RAQQ
Sbjct: 358 EEVQQTVQEDLPHPTAETVEIARFAEQPVRAQQ 390
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 25.8 bits (54), Expect = 4.4
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -1
Query: 276 DEPAEMAAGCQLQEVQLVHVEHLDARDVAECTSQTLVLIIDDKGSFA 136
+E A +AA EVQ+VH E R A ++ VL ++K + A
Sbjct: 513 NEGALIAARSNSNEVQMVHFEQAIERVTAGLEKKSRVLSPEEKNTVA 559
>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1210
Score = 25.4 bits (53), Expect = 5.9
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = +1
Query: 307 DPLFGSWKTPSKEKKNFNLPQPKMANTDLSRL----LKSEEIRKVLRAPN 444
+PLF + KT S ++ L +PK N L RL + SEEI L PN
Sbjct: 971 EPLFVTVKTASTDESRSVLIKPKADNVILFRLKRFIMSSEEIN--LDIPN 1018
>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 293
Score = 25.4 bits (53), Expect = 5.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 334 PSKEKKNFNLPQPKMANTDLSRLLKSEEI 420
PS+ K ++P PKM +TD L SE +
Sbjct: 251 PSQPKNAVSVPIPKMDSTDSKGELPSESL 279
>SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 607
Score = 25.4 bits (53), Expect = 5.9
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = +1
Query: 301 RLDPLFGSWKTPSKEKKNFNLPQPKMANTDLSRLLKSEEIRKVLRAPNKRVVRATRKLN 477
RL+ +W E+ +PQ K + + LK +EIR+ VV + +LN
Sbjct: 259 RLESAKTNWVYAKGERFAVAVPQSKQVSFATKKELKKDEIRRSYSYGGSSVVFGSDELN 317
>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 230
Score = 25.0 bits (52), Expect = 7.7
Identities = 13/58 (22%), Positives = 30/58 (51%)
Frame = +1
Query: 322 SWKTPSKEKKNFNLPQPKMANTDLSRLLKSEEIRKVLRAPNKRVVRATRKLNPLTNTK 495
S+++ K+KK + + + + ++ RL + +E+R + NK+ + KL L +
Sbjct: 169 SFQSRLKQKKQRS--EFRASKREMERLERDQELRNKIEERNKKELETIEKLRELAKAR 224
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 25.0 bits (52), Expect = 7.7
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +1
Query: 340 KEKKNFNLPQPKMANTDLSRLLKSEEIRKVLRAPNKRVVRATRKLNPLTNTKAMLKLNP 516
K+K + + Q K L++ S E + VL +R T+K LTN+ ++K +P
Sbjct: 730 KQKAHLSADQCKQLANVLTQA--SPEAKTVLEQHRLSEMRKTKKQTELTNSAHVIKPSP 786
>SPCC1753.03c |rec7||meiotic recombination protein Rec7
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 339
Score = 25.0 bits (52), Expect = 7.7
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +1
Query: 286 KSAFDRLDPLFGSWKTPSKEKKNFNLPQPKMANTDLSRLLKSEEIRKVLRAPN 444
K F++L +F K+ S EKK FN Q + N+ L+ + + + PN
Sbjct: 108 KVEFEKLGLVFKDAKS-SSEKKQFNNSQSQSNNSQELSLMNNAYNKSSAQQPN 159
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,016,240
Number of Sequences: 5004
Number of extensions: 36736
Number of successful extensions: 126
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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