Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_E09
(567 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 190 9e-49
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 188 4e-48
02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216 31 0.64
02_05_0512 + 29675835-29675901,29676681-29676813,29677020-296771... 31 0.85
11_04_0025 + 12382485-12382823,12382835-12382894,12382960-123830... 30 1.1
12_01_0861 + 8153108-8153266,8154633-8155136 28 4.5
11_02_0065 - 7938007-7938393,7939292-7939435,7940597-7940665,794... 28 6.0
10_07_0133 + 13274190-13274317,13274533-13276371,13277064-132772... 28 6.0
07_01_0929 + 7818973-7820019,7820092-7820328,7820455-7820541,782... 27 7.9
03_02_0377 - 7898075-7898605,7900782-7901000,7901079-7901142,790... 27 7.9
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 190 bits (462), Expect = 9e-49
Identities = 86/185 (46%), Positives = 125/185 (67%), Gaps = 1/185 (0%)
Frame = +1
Query: 13 KTKQAVIFLRRINAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKG-LTRAF 189
KT QA+ L+++ A++D K S +R GKGKMRNRR + RKGPLI+Y + + +AF
Sbjct: 167 KTSQAIKILKQVGAYADAEKAKDSVGIRPGKGKMRNRRYINRKGPLIVYGTEGSKIVKAF 226
Query: 190 RNIPGIEMXXXXXXXXXXXAPGGHLGRFIIWTKSAFDRLDPLFGSWKTPSKEKKNFNLPQ 369
RN+PG+++ APGGHLGRF+IWT+SAF +L+ ++G+++ PS +KK F LP+
Sbjct: 227 RNLPGVDVANVERLNLLDLAPGGHLGRFVIWTESAFKKLEEVYGTFEAPSLKKKGFILPR 286
Query: 370 PKMANTDLSRLLKSEEIRKVLRAPNKRVVRATRKLNPLTNTKAMLKLNPYAAVLRRKAVL 549
PKMAN DL R++ S+E++ V++ NK V R ++ NPL N A+LKLNPY R+ A L
Sbjct: 287 PKMANADLGRIINSDEVQSVVKPLNKEVKRREKRKNPLKNVAAVLKLNPYFGTARKMATL 346
Query: 550 EQVRR 564
+ R
Sbjct: 347 AEAAR 351
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 188 bits (457), Expect = 4e-48
Identities = 88/185 (47%), Positives = 123/185 (66%), Gaps = 1/185 (0%)
Frame = +1
Query: 13 KTKQAVIFLRRINAWSDVLKVYKSQRLRAGKGKMRNRRRVQRKGPLIIYNKDKG-LTRAF 189
KT Q++ L++I A++D K S +RAGKGKMRNRR + RKGPLI+Y + + +AF
Sbjct: 166 KTAQSIKVLKQIGAYADAEKTKDSVAIRAGKGKMRNRRYINRKGPLIVYGTEGSKVVKAF 225
Query: 190 RNIPGIEMXXXXXXXXXXXAPGGHLGRFIIWTKSAFDRLDPLFGSWKTPSKEKKNFNLPQ 369
RN+PG+++ APGGHLGRF+IWT+ AF +LD ++G + TP+ +KK F LP+
Sbjct: 226 RNLPGVDVANVERLNLLDLAPGGHLGRFVIWTECAFKKLDEVYGGFDTPALKKKGFVLPR 285
Query: 370 PKMANTDLSRLLKSEEIRKVLRAPNKRVVRATRKLNPLTNTKAMLKLNPYAAVLRRKAVL 549
PKMAN DLSRL+ S+E++ V++ NK V + NPL N A+LKLNPY R+ A L
Sbjct: 286 PKMANADLSRLINSDEVQSVVKPINKEVKLREARRNPLKNVAAVLKLNPYFGTARKMAAL 345
Query: 550 EQVRR 564
+ R
Sbjct: 346 AEAAR 350
>02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216
Length = 1030
Score = 31.1 bits (67), Expect = 0.64
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = +1
Query: 247 APG--GHLGRFIIWTKSAFDRLDPLFGSWKTPSKEKKNFNLPQPKMANT 387
APG G GR+++ SA + LDP F SW S+E K F++ + A++
Sbjct: 670 APGVDGCSGRYVV-AASAGNALDPGFCSWDYYSREAKAFHIEEISHASS 717
>02_05_0512 +
29675835-29675901,29676681-29676813,29677020-29677164,
29677586-29678407
Length = 388
Score = 30.7 bits (66), Expect = 0.85
Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Frame = +3
Query: 345 EEELQPAPAEDGQHRPQPSAEVRRDPQGPARAQQACC*SDTEIEPADQYEGDVEAE--PV 518
EEE A D RP P VR +G R + A S E+E G V+ E PV
Sbjct: 304 EEESLAAGRHDAMRRPVPGQVVRLGEEGRERREGADG-SGEEVEERRGEVGGVDGERPPV 362
Query: 519 RRGAETEGGSRTG 557
R E +R+G
Sbjct: 363 RGDVEDAVAARSG 375
>11_04_0025 +
12382485-12382823,12382835-12382894,12382960-12383073,
12383187-12383837
Length = 387
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 309 PAVRLVEDTIEGEEELQPAPAEDGQHRPQPSAEVRRDPQGPA 434
P++ D E EE++ A AE R PSA +R P P+
Sbjct: 45 PSIEQALDEEETEEDVDQAAAEASDTRKTPSASPKRTPPTPS 86
>12_01_0861 + 8153108-8153266,8154633-8155136
Length = 220
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +3
Query: 318 RLVEDTIEGEEELQP-APAEDGQHRPQPSAEVRRDPQ 425
RL + +G+EE++P + E G H P PS+++R P+
Sbjct: 60 RLGREREKGDEEMEPVSMTEKGAHHP-PSSQLRAAPR 95
>11_02_0065 -
7938007-7938393,7939292-7939435,7940597-7940665,
7940762-7940809,7941488-7941584,7941688-7941767,
7941841-7941912,7942256-7942350,7943903-7943984,
7945176-7945209,7945255-7945262,7945657-7946058
Length = 505
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 339 EGEEELQPAPAEDGQHRPQPSAEVRRDPQGP 431
+ E++ Q P Q +PQP A + P GP
Sbjct: 444 KNEQQQQAQPQPQPQPQPQPPAGANKQPPGP 474
>10_07_0133 +
13274190-13274317,13274533-13276371,13277064-13277253,
13277442-13277657
Length = 790
Score = 27.9 bits (59), Expect = 6.0
Identities = 17/68 (25%), Positives = 32/68 (47%)
Frame = +1
Query: 280 WTKSAFDRLDPLFGSWKTPSKEKKNFNLPQPKMANTDLSRLLKSEEIRKVLRAPNKRVVR 459
W A DR+ F + +++ N K+ + ++ R SEEI + +RA V++
Sbjct: 108 WLDKALDRILEKFEQMEAKRMQEEKINQIFQKLEDIEVLRSKASEEIIEAIRA-TTAVLK 166
Query: 460 ATRKLNPL 483
A + P+
Sbjct: 167 AKSPIAPI 174
>07_01_0929 +
7818973-7820019,7820092-7820328,7820455-7820541,
7820785-7820919
Length = 501
Score = 27.5 bits (58), Expect = 7.9
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 360 PAPAEDGQHRPQPSAEVRRDPQGPARAQQ 446
PAP++DG P+PS D + P ++
Sbjct: 405 PAPSDDGSASPEPSEGESADEKNPEEEEE 433
>03_02_0377 -
7898075-7898605,7900782-7901000,7901079-7901142,
7901226-7901282,7901373-7901471,7901744-7901793,
7902378-7902422,7902967-7903062
Length = 386
Score = 27.5 bits (58), Expect = 7.9
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 312 AVRLVEDTIEGEEELQPAPAEDGQHRP 392
A+ +D +EG EE P P E + RP
Sbjct: 336 AIDEADDAVEGTEEGDPVPGETVEERP 362
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,469,928
Number of Sequences: 37544
Number of extensions: 293532
Number of successful extensions: 1120
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1101
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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