Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_E08
         (233 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    24   3.1  
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    23   5.4  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    22   9.4  
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    22   9.4  
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...    22   9.4  

>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 87  LTFKFRFIIVKLISLYLSLWQFTL*FYAI 173
           L F F  ++V + SLY + W     FY I
Sbjct: 466 LRFYFIILVVCIASLYSAFWPVIYRFYFI 494


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 98  VSFYHCKTNIIIFIPLAIYVIILCDLV 178
           V  Y     +++FI  AI +I LC L+
Sbjct: 21  VVVYSASDPLLLFIVQAIIIIALCRLI 47


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = +1

Query: 169 RFSIINEVPFYMFRD 213
           R+  +N++ FY+FR+
Sbjct: 777 RYDFVNDLVFYLFRN 791


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 632

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 5/14 (35%), Positives = 11/14 (78%)
 Frame = -3

Query: 87 IYMYHFDFLFFIFV 46
          +++YHF F+ + F+
Sbjct: 3  LFLYHFTFIVYYFI 16


>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 467

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 111 IVKLISLYLSLWQFTL 158
           I KLIS++ ++W F L
Sbjct: 4   ITKLISIWNAIWNFLL 19


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 851,182
Number of Sequences: 5004
Number of extensions: 13954
Number of successful extensions: 25
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 57
effective length of database: 2,077,250
effective search space used: 41545000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)