Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_E08
         (233 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0091 + 18048595-18050559                                         26   3.7  
08_02_0918 - 22617388-22617693,22617799-22617848,22618538-226188...    25   8.6  

>01_05_0091 + 18048595-18050559
          Length = 654

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 222 SILISEHIKRHFIYYTKSHK 163
           S L+SEH KRH +YY  + K
Sbjct: 443 SSLLSEHRKRHGLYYLPTGK 462


>08_02_0918 -
           22617388-22617693,22617799-22617848,22618538-22618817,
           22619654-22620340,22622870-22622944,22623150-22623285,
           22624801-22625093,22625776-22626597
          Length = 882

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 157 NVNCQRDKYNDISFTMIKRNLKVNLYVPL*FFVL 56
           N+ C R++ + + F + K  L   LYV L F+ +
Sbjct: 706 NIACVRNEMHFMEFVLSKARLLRKLYVRLSFYAI 739


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,430,723
Number of Sequences: 37544
Number of extensions: 60740
Number of successful extensions: 85
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 14,793,348
effective HSP length: 56
effective length of database: 12,690,884
effective search space used: 266508564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)