Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_E08
         (233 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132949-21|CAB61098.1|  866|Caenorhabditis elegans Hypothetical...    26   4.1  
AF039042-11|AAC48251.1|  343|Caenorhabditis elegans Serpentine r...    26   4.1  
U50300-8|AAC48105.1|  646|Caenorhabditis elegans Hypothetical pr...    25   7.2  
U41107-1|AAC71166.1|  220|Caenorhabditis elegans Hypothetical pr...    25   7.2  
U40028-6|AAA81117.1|  241|Caenorhabditis elegans Hypothetical pr...    25   7.2  

>AL132949-21|CAB61098.1|  866|Caenorhabditis elegans Hypothetical
           protein Y53F4B.24 protein.
          Length = 866

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = +3

Query: 66  NQSGTYKLTFKFRFIIVKLISLYLSLWQFTL 158
           N++ T  L +KF ++ + L++  +S+W+ TL
Sbjct: 104 NKTYTITLKYKFGYVNLVLVNEQISVWRRTL 134


>AF039042-11|AAC48251.1|  343|Caenorhabditis elegans Serpentine
           receptor, class h protein199 protein.
          Length = 343

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 78  YHFDFLFFIFVYITYKSLFLK*YIL 4
           YHF F+F + V I ++ +F   Y++
Sbjct: 196 YHFSFIFSLHVLICFEVIFFFGYLI 220


>U50300-8|AAC48105.1|  646|Caenorhabditis elegans Hypothetical
           protein R03H4.6 protein.
          Length = 646

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 129 LYLSLWQFTL*FYAI*YNK*SAFLYVPRL 215
           ++L LWQF+  F A+ + K S + Y  +L
Sbjct: 193 MFLRLWQFSAGFMALFWKKISFYEYSEKL 221


>U41107-1|AAC71166.1|  220|Caenorhabditis elegans Hypothetical
           protein F55C12.4 protein.
          Length = 220

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 78  TYKLTFKFRFIIVKLISLY 134
           TYK  F F FI + L++LY
Sbjct: 50  TYKTIFLFSFIFIFLLALY 68


>U40028-6|AAA81117.1|  241|Caenorhabditis elegans Hypothetical
          protein T05A7.2 protein.
          Length = 241

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 75 HFDFLFFIFVYITY 34
          HF F+F + VY+T+
Sbjct: 2  HFSFIFLVLVYLTF 15


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,517,495
Number of Sequences: 27780
Number of extensions: 73652
Number of successful extensions: 198
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 12,740,198
effective HSP length: 57
effective length of database: 11,156,738
effective search space used: 223134760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)