Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_E07
         (449 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta...    28   0.76 
SPAC1687.06c |rpl44|rpl28|60S ribosomal protein L28/L44|Schizosa...    27   1.8  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   4.1  
SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom...    25   4.1  
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy...    25   4.1  
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc...    25   5.4  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    25   7.1  
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl...    25   7.1  
SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces pomb...    24   9.4  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    24   9.4  
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro...    24   9.4  

>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 27.9 bits (59), Expect = 0.76
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +3

Query: 153 QRIKTRKRDEKEKYDPNGFRDALVQGLERAGGDLDAAYKFLDSAGSKLD 299
           QR    K+D+KEK +    ++A V+ +E+A   L+ A K   +   K D
Sbjct: 208 QRPSVIKKDKKEKKEGKPSQEASVKSVEKAPKGLEGAKKEKQNKKEKKD 256


>SPAC1687.06c |rpl44|rpl28|60S ribosomal protein
           L28/L44|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 134

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 19/62 (30%), Positives = 31/62 (50%)
 Frame = +3

Query: 6   GTRGNRIRRSFFLNRRSPKNSQKELRLLHNLSIAIYCMSQKVEKPVLSGQRIKTRKRDEK 185
           G + N  R    + + +PKN+QK  +L     IA    S+K  K + +G+  +T  RD+ 
Sbjct: 55  GVQANSPRGVVLITKTNPKNAQKPAKLFRKDVIA-NASSRKTYKSI-AGRIGRTGYRDDL 112

Query: 186 EK 191
            K
Sbjct: 113 VK 114


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +1

Query: 190 SMTLTGSATPLSRVWSARAVISTRLTNS*IRLARNSTTGAMARSYSM 330
           S+  T SAT  S   S+ A  ++  ++S    + NSTT A A S S+
Sbjct: 199 SLNSTTSATATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSI 245


>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 266

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -3

Query: 180 HLFFWSLSVDPIILVFLPSDSYNILLLTGY 91
           ++  WSL + P+I  F+PS  +  +   G+
Sbjct: 181 YVSLWSLILTPLIFFFVPSTPFIDMAFAGF 210


>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 478

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 378 DGESPRPILAFSPATKTWTRCATL 449
           DGE+P  I+  S  TK W +  TL
Sbjct: 398 DGETPLAIVKASSGTKGWPKMFTL 421


>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 517

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 120 SQKVEKPVLSGQRIKTRKRDE 182
           +Q++++PV  G  IK  K+DE
Sbjct: 496 AQEMDEPVTQGSNIKQEKQDE 516


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
 Frame = -3

Query: 168 WSLSVDPIILVFLPS---DSYNILLLTGYVGALTPFASS*DCACSERKNGVF 22
           W+L +      F P     S+N+  L      L+ F S  +CA  ++KN VF
Sbjct: 336 WTLDISHPFRQFAPGMSRPSFNMEELELLSEVLSTFLSFNECASQDKKNCVF 387


>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
           Plh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 623

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
 Frame = +3

Query: 312 GEVIFDVLIAGGLLLPGGSVSMDGESPRPILAFS-PATKTW 431
           G+ + D  +  G  +  G V  DG+   PILA      K W
Sbjct: 502 GQPVIDSSVNDGTKVENGIVMDDGDGTLPILALGLVCNKVW 542


>SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 457

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = +3

Query: 156 RIKTRKRDEKEKYDPNG-FRDA---LVQGLERAGGDLDAAYKFLDSAGSK 293
           R   + ++ +E  D NG F DA    +QG E   G L+  + FL+ A +K
Sbjct: 209 RTMEQLKEIEEMKDSNGMFCDADHVPLQGQELCNGILEECFSFLEDAKTK 258


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
 Frame = +3

Query: 159 IKTRKRDEKEKYDPNGFRDALVQGLERAGGDLDAAYKFLDSAGSKLDYRRYGEVIFD--V 332
           + ++K+D  + Y   G  D LV     A   LDA    +D     + +  Y E I D  +
Sbjct: 376 LHSKKQDILKLYSDLGINDDLVVPFCEAASSLDA----IDDLNDYIHF-TYSEQIRDRAL 430

Query: 333 LIAGGLLLPGGS 368
           L+  GL  P GS
Sbjct: 431 LMGTGLRRPQGS 442


>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
           6-
           hydroxymethyldihydropteridinediphosphokinase/dihydroneop
           terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = +1

Query: 202 TGSATPLSRVWSARAVISTRLTNS*IRLARNSTTGAMARSYSM 330
           TG A+P  R+W   A ++  +    + + R   T  M++   M
Sbjct: 637 TGDASPKDRIWGTSACVTASVLQG-VSIVRVHDTKEMSKVVGM 678


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,840,259
Number of Sequences: 5004
Number of extensions: 34784
Number of successful extensions: 125
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)