Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_E07
(449 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0007 - 12074472-12074538,12074908-12075116,12077202-120774... 70 1e-12
07_03_1347 + 25932185-25932748,25933151-25933755,25935797-259362... 30 0.75
03_02_0205 + 6389343-6389609,6390418-6390486,6390662-6390757,639... 30 0.75
07_03_0634 + 20125242-20125688 29 1.7
11_05_0065 + 18766566-18766576,18767023-18767083,18767170-187672... 29 2.3
03_01_0327 - 2544839-2545458,2546213-2546345 28 4.0
04_04_0578 + 26353830-26353929,26354030-26354277,26354539-26354931 27 5.3
01_01_0132 - 1197988-1198206,1198255-1198356,1198518-1198821,119... 27 5.3
11_01_0184 - 1444246-1444434,1446291-1446719 27 7.0
06_03_1455 + 30264023-30264174,30265930-30266070,30266328-302664... 27 7.0
03_05_0600 + 26021863-26022469,26022562-26022992 27 7.0
03_03_0265 - 16000085-16000319,16001730-16001854,16004323-16005492 27 7.0
06_03_1380 + 29747187-29747267,29747349-29747481,29747758-297477... 27 9.2
01_03_0020 - 11698429-11699126,11699557-11700532 27 9.2
>11_04_0007 -
12074472-12074538,12074908-12075116,12077202-12077463,
12077547-12078043,12078651-12078719,12079258-12079363,
12080272-12080295,12081184-12081242,12081383-12081520
Length = 476
Score = 69.7 bits (163), Expect = 1e-12
Identities = 39/92 (42%), Positives = 53/92 (57%)
Frame = +3
Query: 87 LHNLSIAIYCMSQKVEKPVLSGQRIKTRKRDEKEKYDPNGFRDALVQGLERAGGDLDAAY 266
L +L +++ C EKP L GQRIKTRKR+ DP F DA+VQ GDL+
Sbjct: 57 LSDLFVSLKCSK---EKPTLGGQRIKTRKRNIAAPLDPASFSDAIVQIYLDNAGDLELVA 113
Query: 267 KFLDSAGSKLDYRRYGEVIFDVLIAGGLLLPG 362
K ++S S L++ RYG+ F+V+ GG PG
Sbjct: 114 KSIES--SDLNFSRYGDTFFEVVFIGGRTQPG 143
>07_03_1347 +
25932185-25932748,25933151-25933755,25935797-25936214,
25936433-25936555,25936775-25936989,25937157-25937412,
25937844-25938149,25938764-25938820,25939635-25939685
Length = 864
Score = 30.3 bits (65), Expect = 0.75
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 180 EKEKYDPNGFRDALVQGLERAGGDLDAAYKFLDSAGSKLDYRRYGE-VIFD 329
EK+K DP GF D V A G ++ F S+G DY YGE V+FD
Sbjct: 62 EKDKDDPEGFYDHKVAA---ADGRMEGI--FWASSGLGWDYVYYGEVVVFD 107
>03_02_0205 +
6389343-6389609,6390418-6390486,6390662-6390757,
6391120-6391244,6391331-6391483,6392863-6392992,
6393122-6393282,6393660-6393702,6393869-6394042,
6394471-6394525,6394567-6394746,6396234-6396339,
6396448-6396506,6397419-6397541,6397825-6397919
Length = 611
Score = 30.3 bits (65), Expect = 0.75
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +3
Query: 153 QRIKTRKRDEKEKYDPNGFRDALVQGLERAGGDLDAAYKFLDSAGSKLDYRRYGE 317
Q +KT R KY P+ +D G E ++ AAY+ L + Y R+GE
Sbjct: 77 QEVKTAYRTLARKYHPDMNKDP---GAEEKFKEISAAYEILSDEEKRSLYDRFGE 128
>07_03_0634 + 20125242-20125688
Length = 148
Score = 29.1 bits (62), Expect = 1.7
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = +1
Query: 166 PEKEMRKRSMTLTGSATPLSR---VWSARAVISTRLTNS*IRLARNSTTGAMARSYSMCL 336
P + + R+M S LS V S RAV S T S + T + +S+ L
Sbjct: 24 PRRRVHWRNMRCANSVAYLSLSAFVMSGRAVASAAATAS-PPVGVQLTVTSEHSEWSI-L 81
Query: 337 SPAVSCCPVGRCRWTG 384
SP +C P G+ +W G
Sbjct: 82 SPRKTCHPTGKVKWKG 97
>11_05_0065 + 18766566-18766576,18767023-18767083,18767170-18767268,
18767346-18767467,18767577-18767673,18767778-18767824,
18768020-18768203,18768349-18768400,18768795-18768985,
18769072-18770020,18770866-18771022,18771134-18771206,
18771292-18771465,18771880-18771993,18772110-18772236,
18772331-18772443,18772614-18772729,18772847-18773000
Length = 946
Score = 28.7 bits (61), Expect = 2.3
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +3
Query: 225 QGLERAGGDLDAAYKFLDSAGSKLDYRRYGEVIFDVLIAGGLLLP-GGSVSMDGESPRPI 401
Q + DL A L+ +++ R +++ D ++AG L P GGS S D P
Sbjct: 878 QAFQSPSKDLAAINSRLNYPTRRINTRINFDMVSDSVVAGSLGQPNGGSASSD-----PA 932
Query: 402 LAFSPATK 425
AFSP +K
Sbjct: 933 AAFSPLSK 940
>03_01_0327 - 2544839-2545458,2546213-2546345
Length = 250
Score = 27.9 bits (59), Expect = 4.0
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 336 IAGGLLLPGGSVSMDGESPRPILAFSPATKTWT 434
I G +L GG+ DG S P ++F PA +W+
Sbjct: 181 IVGANILVGGA--FDGASMNPAVSFGPALVSWS 211
>04_04_0578 + 26353830-26353929,26354030-26354277,26354539-26354931
Length = 246
Score = 27.5 bits (58), Expect = 5.3
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +3
Query: 333 LIAGGLLLPGGSVSMDGESPRPILAFSPATKTW 431
L+AG +L GG DG + P AF PA W
Sbjct: 168 LVAGANILAGGP--FDGAAMNPARAFGPALVGW 198
>01_01_0132 -
1197988-1198206,1198255-1198356,1198518-1198821,
1199221-1199292,1199384-1199420,1199527-1199585,
1199844-1200128,1200293-1200465,1201020-1201213,
1202245-1202374
Length = 524
Score = 27.5 bits (58), Expect = 5.3
Identities = 11/36 (30%), Positives = 27/36 (75%)
Frame = +3
Query: 42 LNRRSPKNSQKELRLLHNLSIAIYCMSQKVEKPVLS 149
+++++ +N ++ ++LHNLS+A+ C++ + PVL+
Sbjct: 243 ISQKTSENYRRIRKVLHNLSVALICIAALM--PVLA 276
>11_01_0184 - 1444246-1444434,1446291-1446719
Length = 205
Score = 27.1 bits (57), Expect = 7.0
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Frame = +2
Query: 284 WLETRLPALW--RGHIRC--AYRRRSPAARWVGVDGRGIPKTNTCIFSGNE 424
W R + W RG+I A RRRS AR VGV G G + + G E
Sbjct: 2 WRPYRRASWWGTRGYIPSDDAGRRRSRVARGVGVRGGGAGRGRRGVEGGEE 52
>06_03_1455 +
30264023-30264174,30265930-30266070,30266328-30266430,
30266510-30266659,30267184-30267229,30267383-30267738
Length = 315
Score = 27.1 bits (57), Expect = 7.0
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 269 IPRFGWLETRLPALWRGHIRCAYRRRSPAAR 361
I RFG + P+ +RG+ + R RSPAAR
Sbjct: 45 ISRFGAWYSGSPSPYRGNPKSRSRSRSPAAR 75
>03_05_0600 + 26021863-26022469,26022562-26022992
Length = 345
Score = 27.1 bits (57), Expect = 7.0
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 382 PSIDTDPPGSRRPPA 338
PS+D +PPG PPA
Sbjct: 220 PSLDNEPPGGSTPPA 234
>03_03_0265 - 16000085-16000319,16001730-16001854,16004323-16005492
Length = 509
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 375 MDGESPRPILAFSPATKTWTRC 440
+ G PRP LAF A ++W C
Sbjct: 76 LSGARPRPPLAFDAAGRSWIPC 97
>06_03_1380 +
29747187-29747267,29747349-29747481,29747758-29747770,
29748027-29748118,29749011-29749831,29750375-29750677
Length = 480
Score = 26.6 bits (56), Expect = 9.2
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 177 DEKEKYDPNGFRDALVQGLERAGGDLDAAYKF 272
D K +Y+ + R ALV ++R GG A F
Sbjct: 273 DGKPEYNQDAHRQALVDWVDRVGGTASAGMVF 304
>01_03_0020 - 11698429-11699126,11699557-11700532
Length = 557
Score = 26.6 bits (56), Expect = 9.2
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Frame = +3
Query: 195 DPNGFRDALVQGLER-AGGDLDAAYKFLDSAGSKLDYRRYGEVIFDVLIAGGLLLPGGSV 371
DPN +QG A DL A F + ++ Y + + GGL+ P G +
Sbjct: 428 DPNQNTGTTIQGCAIVAAPDLAANTAFATTNYLGRPWKLYSRTVIMQSVVGGLIDPAGWM 487
Query: 372 SMDGE 386
DG+
Sbjct: 488 PWDGD 492
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,678,603
Number of Sequences: 37544
Number of extensions: 270277
Number of successful extensions: 969
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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