Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_E06
         (346 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein L17|Sc...    87   7e-19
SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein L17|Sch...    86   1e-18
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    26   1.4  
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy...    25   2.5  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    25   3.3  
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    25   4.4  
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual           24   5.8  
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    24   5.8  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    24   7.6  
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce...    24   7.6  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    24   7.6  
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    24   7.6  

>SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score = 87.0 bits (206), Expect = 7e-19
 Identities = 41/76 (53%), Positives = 50/76 (65%)
 Frame = +3

Query: 33  MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKKECIPF 212
           M RYS  P    K  KARG+ LR HFKN+ E A  I  + L++A  +L NV E K+ +PF
Sbjct: 1   MVRYSASPALETKCAKARGAYLRTHFKNSREVAFTINGMSLKKAFIFLDNVKEHKQAVPF 60

Query: 213 RRFNGGVGRCAQAKQF 260
           RRFNGGVGR AQ K+F
Sbjct: 61  RRFNGGVGRTAQGKEF 76



 Score = 29.1 bits (62), Expect = 0.20
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 259 FGTTQGRWPKKSAEFLLQL 315
           FG TQ RWP KS +F   L
Sbjct: 76  FGVTQARWPVKSVKFFYDL 94


>SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 187

 Score = 86.2 bits (204), Expect = 1e-18
 Identities = 41/76 (53%), Positives = 50/76 (65%)
 Frame = +3

Query: 33  MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKKECIPF 212
           M RYS  P    K  KARG+ LR HFKN+ E A  I  + L++A  +L NV E K+ +PF
Sbjct: 1   MVRYSAAPALETKCAKARGAYLRTHFKNSREVAFTINGMNLKKAFIFLDNVKEHKQAVPF 60

Query: 213 RRFNGGVGRCAQAKQF 260
           RRFNGGVGR AQ K+F
Sbjct: 61  RRFNGGVGRTAQGKEF 76



 Score = 28.7 bits (61), Expect = 0.27
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +1

Query: 259 FGTTQGRWPKKSAEFLLQL 315
           FG TQ RWP KS  F   L
Sbjct: 76  FGVTQARWPVKSVNFFYDL 94


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 93  NLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEK-KECI 206
           NLRV  K T ++ +++   P  +  RYLK + E  K+C+
Sbjct: 102 NLRVSKKKTSKSDVSMAGFPFFKLDRYLKILVEDLKKCV 140


>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 93  LSHALYMT*QGYPAPESNDPFFISPR 16
           +S  +++  +GY AP+  DP F  PR
Sbjct: 190 VSAEIFVVCRGYKAPKKLDPRFTDPR 215


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 134 GYKKTASSPCCPLPKECDRKEGMHSL 211
           GY   + S   P+PK+  RKE  +SL
Sbjct: 262 GYSDHSVSVAAPIPKKESRKESSNSL 287


>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +3

Query: 90  SNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKK 197
           +N ++  K+  ETA A+RK+  +  +R L+ + ++K
Sbjct: 73  TNYKILQKSNDETAQAMRKMQDQARLRDLQKIRQQK 108


>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 329 QHSSYSWSRNSADFL 285
           QH +Y W+R S  FL
Sbjct: 129 QHQAYKWTRTSRTFL 143


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = -3

Query: 338 HVIQHSSYSWSRNSADFLGQRPCVVPKLFSLCTTANS 228
           HV QHS    S   A  L   P V     SL ++ +S
Sbjct: 61  HVFQHSQSPLSHKDASLLATMPSVASSNPSLISSGSS 97


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +3

Query: 159 RAVRYLKNVTEKKECIPFRRFNGGVGRCAQAKQFW 263
           RAV+YLK   ++++  P+   N      ++A   W
Sbjct: 643 RAVKYLKQDGKRRDPYPYWHRNSDFSHISEALYAW 677


>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 610

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +3

Query: 249 AKQFWYHTG 275
           AKQFW HTG
Sbjct: 158 AKQFWQHTG 166


>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -3

Query: 335  VIQHSSYSWSRNSADFLGQRPCVVPKLFSLCTTANS 228
            +++  S +W +     L Q      KLF L + ANS
Sbjct: 1001 LLKEKSENWMKQVEGLLSQETLSTSKLFQLKSEANS 1036


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 102 VHFKNTYETAMAIRKLPLRRAVRYLKNVTEK 194
           VH K+  ETA  I+  P  R    LKN ++K
Sbjct: 327 VHCKSNQETAKHIQNNPRIRINSILKNNSQK 357


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,593,101
Number of Sequences: 5004
Number of extensions: 31026
Number of successful extensions: 67
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)