Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_E06
(346 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0105 - 4337047-4337079,4337175-4337242,4337323-4337425,433... 103 4e-23
08_02_1361 - 26398987-26399019,26399320-26399387,26399458-263995... 92 1e-19
12_01_0254 + 1885412-1885683,1886123-1886389,1886501-1887077 27 3.0
11_01_0256 + 1969292-1969563,1970004-1970270,1970413-1970989 27 3.0
08_02_0628 + 19459198-19459674,19459751-19459894,19460191-194604... 27 3.9
01_01_0714 - 5539961-5540401 27 5.2
11_03_0158 + 10911997-10912078,10912203-10912288,10913780-109138... 26 9.1
04_01_0206 + 2507827-2508705,2508844-2509902 26 9.1
>09_02_0105 -
4337047-4337079,4337175-4337242,4337323-4337425,
4337507-4337737,4339307-4339347,4339437-4339473,
4339603-4339605
Length = 171
Score = 103 bits (247), Expect = 4e-23
Identities = 50/74 (67%), Positives = 58/74 (78%)
Frame = +3
Query: 33 MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKKECIPF 212
M +YSRE +NP KS KA G +LRVHFKNT ETA AIRKLPL +A RYL++V K+ IPF
Sbjct: 1 MVKYSREANNPTKSSKAMGRDLRVHFKNTRETAFAIRKLPLGKAKRYLEDVIAHKQAIPF 60
Query: 213 RRFNGGVGRCAQAK 254
RR+ GGVGR AQAK
Sbjct: 61 RRYCGGVGRTAQAK 74
Score = 29.1 bits (62), Expect = 0.98
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1
Query: 271 QGRWPKKSAEFLLQL 315
QGRWP KSA F+L L
Sbjct: 81 QGRWPAKSARFILDL 95
>08_02_1361 -
26398987-26399019,26399320-26399387,26399458-26399560,
26399658-26399888,26400791-26400826,26400891-26400931,
26401028-26401064,26401158-26401160
Length = 183
Score = 91.9 bits (218), Expect = 1e-19
Identities = 49/86 (56%), Positives = 57/86 (66%), Gaps = 12/86 (13%)
Frame = +3
Query: 33 MGRYSREPDNPAKSCKARGSNLRVHFK------------NTYETAMAIRKLPLRRAVRYL 176
MG+YS EP NP KS KA G +LRVHFK NT ETA A+RKLPL +A RYL
Sbjct: 1 MGKYSTEPSNPTKSAKAMGRDLRVHFKVIVFARFVQCCSNTRETAFALRKLPLVKAKRYL 60
Query: 177 KNVTEKKECIPFRRFNGGVGRCAQAK 254
++V K+ IPFRR+ GGVGR AQ K
Sbjct: 61 EDVIAHKQAIPFRRYCGGVGRTAQVK 86
Score = 29.1 bits (62), Expect = 0.98
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1
Query: 271 QGRWPKKSAEFLLQL 315
QGRWP KSA F+L L
Sbjct: 93 QGRWPAKSARFILDL 107
>12_01_0254 + 1885412-1885683,1886123-1886389,1886501-1887077
Length = 371
Score = 27.5 bits (58), Expect = 3.0
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 86 WLKPSCSLQEHL*NCHGYKKTASSPCCPLP 175
W++ SCS+ E L +C G K T C P
Sbjct: 81 WVEHSCSVPELLDSCRGSKDTKREQECGRP 110
>11_01_0256 + 1969292-1969563,1970004-1970270,1970413-1970989
Length = 371
Score = 27.5 bits (58), Expect = 3.0
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 86 WLKPSCSLQEHL*NCHGYKKTASSPCCPLP 175
W++ SCS+ E L +C G K T C P
Sbjct: 81 WVEHSCSVPELLDSCRGSKDTKREQECGRP 110
>08_02_0628 +
19459198-19459674,19459751-19459894,19460191-19460431,
19460616-19461116,19461226-19461635
Length = 590
Score = 27.1 bits (57), Expect = 3.9
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +2
Query: 161 CCPLPKECDRKEGMHSLPSF*RWSWPLCT 247
CCP P + G HS S +SWP T
Sbjct: 32 CCPSPLQPIASGGQHSESSAAYFSWPTST 60
>01_01_0714 - 5539961-5540401
Length = 146
Score = 26.6 bits (56), Expect = 5.2
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 129 AMAIRKLPL-RRAVRYLKNVTEKKECIPFRRFNGGVGRCAQ 248
A+ K+P +R Y +N +K P+RR + RCA+
Sbjct: 103 ALDANKVPCNKRGQSYYQNCASQKAANPYRRGCSAITRCAR 143
>11_03_0158 +
10911997-10912078,10912203-10912288,10913780-10913857,
10913967-10914098,10914385-10914435,10914529-10914669,
10914754-10914876,10914989-10915066,10915448-10915541,
10915633-10915739,10915936-10916019,10916649-10916744,
10916835-10917023,10917705-10917780,10918507-10918610,
10918708-10918967,10920000-10920086,10920184-10920411,
10920752-10920826,10921264-10921346,10921552-10921661
Length = 787
Score = 25.8 bits (54), Expect = 9.1
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 21 EK*KMGRYSREPDNPAKSCKARGSNLRVHFKN 116
+K + + + + K C RGS +R+H KN
Sbjct: 527 QKHVLAKMAERDEGTLKDCAQRGSFVRLHLKN 558
>04_01_0206 + 2507827-2508705,2508844-2509902
Length = 645
Score = 25.8 bits (54), Expect = 9.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 19 GRNKKWVVTLGSRITLLSHVKRVAQTFVFTSRTPMKL 129
GR++KW ++G L +V QT + S+ MKL
Sbjct: 351 GRSRKWSGSIGQFNLLYFRAAQVNQTNYWLSKCAMKL 387
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,972,763
Number of Sequences: 37544
Number of extensions: 231224
Number of successful extensions: 497
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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