Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_E06
(346 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X53777-1|CAA37793.1| 184|Homo sapiens protein ( Human L23 mRNA ... 125 4e-29
BC106031-1|AAI06032.1| 184|Homo sapiens ribosomal protein L17 p... 125 4e-29
BC066324-1|AAH66324.1| 184|Homo sapiens ribosomal protein L17 p... 125 4e-29
BC066323-1|AAH66323.1| 184|Homo sapiens ribosomal protein L17 p... 125 4e-29
BC017831-1|AAH17831.1| 184|Homo sapiens ribosomal protein L17 p... 125 4e-29
BC000502-1|AAH00502.1| 184|Homo sapiens ribosomal protein L17 p... 125 4e-29
AB061824-1|BAB79462.1| 184|Homo sapiens ribosomal protein L17 p... 125 4e-29
EF560746-1|ABQ59056.1| 979|Homo sapiens KIAA1394 protein protein. 30 1.7
BC036557-1|AAH36557.1| 385|Homo sapiens KIAA1394 protein protein. 30 1.7
AB037815-1|BAA92632.1| 1003|Homo sapiens KIAA1394 protein protein. 30 1.7
BX784396-2|CAI19414.1| 4387|Homo sapiens vacuolar protein sortin... 29 2.9
BX784395-2|CAI19412.1| 4387|Homo sapiens vacuolar protein sortin... 29 2.9
BX682532-2|CAI23591.1| 4387|Homo sapiens vacuolar protein sortin... 29 2.9
AL162331-1|CAB82724.1| 2270|Homo sapiens hypothetical protein pr... 29 2.9
AL109757-2|CAI22116.1| 4387|Homo sapiens vacuolar protein sortin... 29 2.9
AL031296-2|CAI23164.1| 4387|Homo sapiens vacuolar protein sortin... 29 2.9
AL031276-2|CAI19223.1| 4387|Homo sapiens vacuolar protein sortin... 29 2.9
AJ608775-1|CAE75587.1| 4363|Homo sapiens VPS13D-2A protein protein. 29 2.9
AJ608774-1|CAE75586.1| 4388|Homo sapiens VPS13D-1A protein protein. 29 2.9
AF343412-1|AAK51406.1| 97|Homo sapiens psoriasis vulgaris immu... 28 9.0
>X53777-1|CAA37793.1| 184|Homo sapiens protein ( Human L23 mRNA for
putative ribosomal protein. ).
Length = 184
Score = 125 bits (301), Expect = 4e-29
Identities = 54/81 (66%), Positives = 69/81 (85%)
Frame = +3
Query: 33 MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKKECIPF 212
M RYS +P+NP KSCK+RGSNLRVHFKNT ETA AI+ + +R+A +YLK+VT +K+C+PF
Sbjct: 1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 60
Query: 213 RRFNGGVGRCAQAKQFWYHTG 275
RR+NGGVGRCAQAKQ+ + G
Sbjct: 61 RRYNGGVGRCAQAKQWGWTQG 81
Score = 37.5 bits (83), Expect = 0.011
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = +1
Query: 259 FGTTQGRWPKKSAEFLLQL 315
+G TQGRWPKKSAEFLL +
Sbjct: 76 WGWTQGRWPKKSAEFLLHM 94
>BC106031-1|AAI06032.1| 184|Homo sapiens ribosomal protein L17
protein.
Length = 184
Score = 125 bits (301), Expect = 4e-29
Identities = 54/81 (66%), Positives = 69/81 (85%)
Frame = +3
Query: 33 MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKKECIPF 212
M RYS +P+NP KSCK+RGSNLRVHFKNT ETA AI+ + +R+A +YLK+VT +K+C+PF
Sbjct: 1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 60
Query: 213 RRFNGGVGRCAQAKQFWYHTG 275
RR+NGGVGRCAQAKQ+ + G
Sbjct: 61 RRYNGGVGRCAQAKQWGWTQG 81
Score = 37.5 bits (83), Expect = 0.011
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = +1
Query: 259 FGTTQGRWPKKSAEFLLQL 315
+G TQGRWPKKSAEFLL +
Sbjct: 76 WGWTQGRWPKKSAEFLLHM 94
>BC066324-1|AAH66324.1| 184|Homo sapiens ribosomal protein L17
protein.
Length = 184
Score = 125 bits (301), Expect = 4e-29
Identities = 54/81 (66%), Positives = 69/81 (85%)
Frame = +3
Query: 33 MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKKECIPF 212
M RYS +P+NP KSCK+RGSNLRVHFKNT ETA AI+ + +R+A +YLK+VT +K+C+PF
Sbjct: 1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 60
Query: 213 RRFNGGVGRCAQAKQFWYHTG 275
RR+NGGVGRCAQAKQ+ + G
Sbjct: 61 RRYNGGVGRCAQAKQWGWTQG 81
Score = 37.5 bits (83), Expect = 0.011
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = +1
Query: 259 FGTTQGRWPKKSAEFLLQL 315
+G TQGRWPKKSAEFLL +
Sbjct: 76 WGWTQGRWPKKSAEFLLHM 94
>BC066323-1|AAH66323.1| 184|Homo sapiens ribosomal protein L17
protein.
Length = 184
Score = 125 bits (301), Expect = 4e-29
Identities = 54/81 (66%), Positives = 69/81 (85%)
Frame = +3
Query: 33 MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKKECIPF 212
M RYS +P+NP KSCK+RGSNLRVHFKNT ETA AI+ + +R+A +YLK+VT +K+C+PF
Sbjct: 1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 60
Query: 213 RRFNGGVGRCAQAKQFWYHTG 275
RR+NGGVGRCAQAKQ+ + G
Sbjct: 61 RRYNGGVGRCAQAKQWGWTQG 81
Score = 37.5 bits (83), Expect = 0.011
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = +1
Query: 259 FGTTQGRWPKKSAEFLLQL 315
+G TQGRWPKKSAEFLL +
Sbjct: 76 WGWTQGRWPKKSAEFLLHM 94
>BC017831-1|AAH17831.1| 184|Homo sapiens ribosomal protein L17
protein.
Length = 184
Score = 125 bits (301), Expect = 4e-29
Identities = 54/81 (66%), Positives = 69/81 (85%)
Frame = +3
Query: 33 MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKKECIPF 212
M RYS +P+NP KSCK+RGSNLRVHFKNT ETA AI+ + +R+A +YLK+VT +K+C+PF
Sbjct: 1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 60
Query: 213 RRFNGGVGRCAQAKQFWYHTG 275
RR+NGGVGRCAQAKQ+ + G
Sbjct: 61 RRYNGGVGRCAQAKQWGWTQG 81
Score = 37.5 bits (83), Expect = 0.011
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = +1
Query: 259 FGTTQGRWPKKSAEFLLQL 315
+G TQGRWPKKSAEFLL +
Sbjct: 76 WGWTQGRWPKKSAEFLLHM 94
>BC000502-1|AAH00502.1| 184|Homo sapiens ribosomal protein L17
protein.
Length = 184
Score = 125 bits (301), Expect = 4e-29
Identities = 54/81 (66%), Positives = 69/81 (85%)
Frame = +3
Query: 33 MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKKECIPF 212
M RYS +P+NP KSCK+RGSNLRVHFKNT ETA AI+ + +R+A +YLK+VT +K+C+PF
Sbjct: 1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 60
Query: 213 RRFNGGVGRCAQAKQFWYHTG 275
RR+NGGVGRCAQAKQ+ + G
Sbjct: 61 RRYNGGVGRCAQAKQWGWTQG 81
Score = 37.5 bits (83), Expect = 0.011
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = +1
Query: 259 FGTTQGRWPKKSAEFLLQL 315
+G TQGRWPKKSAEFLL +
Sbjct: 76 WGWTQGRWPKKSAEFLLHM 94
>AB061824-1|BAB79462.1| 184|Homo sapiens ribosomal protein L17
protein.
Length = 184
Score = 125 bits (301), Expect = 4e-29
Identities = 54/81 (66%), Positives = 69/81 (85%)
Frame = +3
Query: 33 MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKKECIPF 212
M RYS +P+NP KSCK+RGSNLRVHFKNT ETA AI+ + +R+A +YLK+VT +K+C+PF
Sbjct: 1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 60
Query: 213 RRFNGGVGRCAQAKQFWYHTG 275
RR+NGGVGRCAQAKQ+ + G
Sbjct: 61 RRYNGGVGRCAQAKQWGWTQG 81
Score = 37.5 bits (83), Expect = 0.011
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = +1
Query: 259 FGTTQGRWPKKSAEFLLQL 315
+G TQGRWPKKSAEFLL +
Sbjct: 76 WGWTQGRWPKKSAEFLLHM 94
>EF560746-1|ABQ59056.1| 979|Homo sapiens KIAA1394 protein protein.
Length = 979
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Frame = +2
Query: 110 QEHL*NCHGYKKTASS----PCCPLPKECDRKEGMHSLP 214
Q HL + HG A S PCCPL E D + +H +P
Sbjct: 660 QLHLLHHHGPPWPAPSLHAVPCCPLESEADVERAVHQVP 698
>BC036557-1|AAH36557.1| 385|Homo sapiens KIAA1394 protein protein.
Length = 385
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Frame = +2
Query: 110 QEHL*NCHGYKKTASS----PCCPLPKECDRKEGMHSLP 214
Q HL + HG A S PCCPL E D + +H +P
Sbjct: 66 QLHLLHHHGPPWPAPSLHAVPCCPLESEADVERAVHQVP 104
>AB037815-1|BAA92632.1| 1003|Homo sapiens KIAA1394 protein protein.
Length = 1003
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Frame = +2
Query: 110 QEHL*NCHGYKKTASS----PCCPLPKECDRKEGMHSLP 214
Q HL + HG A S PCCPL E D + +H +P
Sbjct: 684 QLHLLHHHGPPWPAPSLHAVPCCPLESEADVERAVHQVP 722
>BX784396-2|CAI19414.1| 4387|Homo sapiens vacuolar protein sorting
13 homolog D (S. cerevisiae) protein.
Length = 4387
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/45 (24%), Positives = 24/45 (53%)
Frame = +3
Query: 132 MAIRKLPLRRAVRYLKNVTEKKECIPFRRFNGGVGRCAQAKQFWY 266
+ + +L R+ + +LK + K+ + FRR+ V +++WY
Sbjct: 276 LKLSQLQYRQIMEFLKELERKERQVKFRRWKPKVAISKNCREWWY 320
>BX784395-2|CAI19412.1| 4387|Homo sapiens vacuolar protein sorting
13 homolog D (S. cerevisiae) protein.
Length = 4387
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/45 (24%), Positives = 24/45 (53%)
Frame = +3
Query: 132 MAIRKLPLRRAVRYLKNVTEKKECIPFRRFNGGVGRCAQAKQFWY 266
+ + +L R+ + +LK + K+ + FRR+ V +++WY
Sbjct: 276 LKLSQLQYRQIMEFLKELERKERQVKFRRWKPKVAISKNCREWWY 320
>BX682532-2|CAI23591.1| 4387|Homo sapiens vacuolar protein sorting
13 homolog D (S. cerevisiae) protein.
Length = 4387
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/45 (24%), Positives = 24/45 (53%)
Frame = +3
Query: 132 MAIRKLPLRRAVRYLKNVTEKKECIPFRRFNGGVGRCAQAKQFWY 266
+ + +L R+ + +LK + K+ + FRR+ V +++WY
Sbjct: 276 LKLSQLQYRQIMEFLKELERKERQVKFRRWKPKVAISKNCREWWY 320
>AL162331-1|CAB82724.1| 2270|Homo sapiens hypothetical protein
protein.
Length = 2270
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/45 (24%), Positives = 24/45 (53%)
Frame = +3
Query: 132 MAIRKLPLRRAVRYLKNVTEKKECIPFRRFNGGVGRCAQAKQFWY 266
+ + +L R+ + +LK + K+ + FRR+ V +++WY
Sbjct: 276 LKLSQLQYRQIMEFLKELERKERQVKFRRWKPKVAISKNCREWWY 320
>AL109757-2|CAI22116.1| 4387|Homo sapiens vacuolar protein sorting
13 homolog D (S. cerevisiae) protein.
Length = 4387
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/45 (24%), Positives = 24/45 (53%)
Frame = +3
Query: 132 MAIRKLPLRRAVRYLKNVTEKKECIPFRRFNGGVGRCAQAKQFWY 266
+ + +L R+ + +LK + K+ + FRR+ V +++WY
Sbjct: 276 LKLSQLQYRQIMEFLKELERKERQVKFRRWKPKVAISKNCREWWY 320
>AL031296-2|CAI23164.1| 4387|Homo sapiens vacuolar protein sorting
13 homolog D (S. cerevisiae) protein.
Length = 4387
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/45 (24%), Positives = 24/45 (53%)
Frame = +3
Query: 132 MAIRKLPLRRAVRYLKNVTEKKECIPFRRFNGGVGRCAQAKQFWY 266
+ + +L R+ + +LK + K+ + FRR+ V +++WY
Sbjct: 276 LKLSQLQYRQIMEFLKELERKERQVKFRRWKPKVAISKNCREWWY 320
>AL031276-2|CAI19223.1| 4387|Homo sapiens vacuolar protein sorting
13 homolog D (S. cerevisiae) protein.
Length = 4387
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/45 (24%), Positives = 24/45 (53%)
Frame = +3
Query: 132 MAIRKLPLRRAVRYLKNVTEKKECIPFRRFNGGVGRCAQAKQFWY 266
+ + +L R+ + +LK + K+ + FRR+ V +++WY
Sbjct: 276 LKLSQLQYRQIMEFLKELERKERQVKFRRWKPKVAISKNCREWWY 320
>AJ608775-1|CAE75587.1| 4363|Homo sapiens VPS13D-2A protein protein.
Length = 4363
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/45 (24%), Positives = 24/45 (53%)
Frame = +3
Query: 132 MAIRKLPLRRAVRYLKNVTEKKECIPFRRFNGGVGRCAQAKQFWY 266
+ + +L R+ + +LK + K+ + FRR+ V +++WY
Sbjct: 276 LKLSQLQYRQIMEFLKELERKERQVKFRRWKPKVAISKNCREWWY 320
>AJ608774-1|CAE75586.1| 4388|Homo sapiens VPS13D-1A protein protein.
Length = 4388
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/45 (24%), Positives = 24/45 (53%)
Frame = +3
Query: 132 MAIRKLPLRRAVRYLKNVTEKKECIPFRRFNGGVGRCAQAKQFWY 266
+ + +L R+ + +LK + K+ + FRR+ V +++WY
Sbjct: 276 LKLSQLQYRQIMEFLKELERKERQVKFRRWKPKVAISKNCREWWY 320
>AF343412-1|AAK51406.1| 97|Homo sapiens psoriasis vulgaris
immunoglobulin heavy chain protein.
Length = 97
Score = 27.9 bits (59), Expect = 9.0
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +1
Query: 13 SPGRNKKWVVTLGSRITLLSHVKRVAQTFVFT 108
+PG+ +WV ++GSR T + + V F+ +
Sbjct: 25 APGKGLEWVSSIGSRTTYIYYADSVKGRFIIS 56
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,851,135
Number of Sequences: 237096
Number of extensions: 1243659
Number of successful extensions: 2994
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 2816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2994
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1968306988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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