Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_E06
         (346 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal pro...   111   1e-25
AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal pro...    93   6e-20
AC024792-6|AAF60686.2|  901|Caenorhabditis elegans Hypothetical ...    27   4.8  
Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical pr...    26   8.3  
Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical pr...    26   8.3  
Z72518-3|CAB63415.2|  704|Caenorhabditis elegans Hypothetical pr...    26   8.3  
Z49131-7|CAA88980.3|  704|Caenorhabditis elegans Hypothetical pr...    26   8.3  
Z48638-9|CAA88569.1|  202|Caenorhabditis elegans Hypothetical pr...    26   8.3  

>AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform a protein.
          Length = 187

 Score =  111 bits (267), Expect = 1e-25
 Identities = 49/73 (67%), Positives = 60/73 (82%)
 Frame = +3

Query: 42  YSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKKECIPFRRF 221
           YSR P+N  KSCKARGS+LRVHFKNT+E AMA+R +PLRRA  +L +V E KE +PFRRF
Sbjct: 6   YSRAPENSTKSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRF 65

Query: 222 NGGVGRCAQAKQF 260
           +GG+GR AQ KQ+
Sbjct: 66  HGGIGRAAQTKQW 78



 Score = 34.7 bits (76), Expect = 0.018
 Identities = 14/19 (73%), Positives = 16/19 (84%)
 Frame = +1

Query: 259 FGTTQGRWPKKSAEFLLQL 315
           + TTQGRWP KSA+FLL L
Sbjct: 78  WNTTQGRWPVKSADFLLDL 96


>AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform b protein.
          Length = 159

 Score = 92.7 bits (220), Expect = 6e-20
 Identities = 41/60 (68%), Positives = 49/60 (81%)
 Frame = +3

Query: 42  YSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKKECIPFRRF 221
           YSR P+N  KSCKARGS+LRVHFKNT+E AMA+R +PLRRA  +L +V E KE +PFRRF
Sbjct: 6   YSRAPENSTKSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRF 65


>AC024792-6|AAF60686.2|  901|Caenorhabditis elegans Hypothetical
           protein Y48G1A.1 protein.
          Length = 901

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 122 IGVLEVNTKV*ATRFT*LSRVIRLPRVTTHFLFLPGEN 9
           +G+L   + V   R   + RVI++    TH +FL  EN
Sbjct: 121 LGLLSDGSPVSEPRLVPVPRVIQIEMTNTHTIFLTAEN 158


>Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical protein
            T12D8.1 protein.
          Length = 2561

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
 Frame = +2

Query: 263  VPHRVVGPRNLQNS--CSNCMRNAESHA 340
            +   +V P   QNS  C NC +  ESH+
Sbjct: 1761 IKREIVEPSQSQNSSQCKNCQKALESHS 1788


>Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical protein
            T12D8.1 protein.
          Length = 2561

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
 Frame = +2

Query: 263  VPHRVVGPRNLQNS--CSNCMRNAESHA 340
            +   +V P   QNS  C NC +  ESH+
Sbjct: 1761 IKREIVEPSQSQNSSQCKNCQKALESHS 1788


>Z72518-3|CAB63415.2|  704|Caenorhabditis elegans Hypothetical
           protein ZC373.1 protein.
          Length = 704

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = -1

Query: 271 VWYQNCLACAQRPTP--PLKRRKGMH 200
           + Y   L  AQRPTP  PLK+ K  H
Sbjct: 17  ITYNTILEAAQRPTPLVPLKKLKVEH 42


>Z49131-7|CAA88980.3|  704|Caenorhabditis elegans Hypothetical
           protein ZC373.1 protein.
          Length = 704

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = -1

Query: 271 VWYQNCLACAQRPTP--PLKRRKGMH 200
           + Y   L  AQRPTP  PLK+ K  H
Sbjct: 17  ITYNTILEAAQRPTPLVPLKKLKVEH 42


>Z48638-9|CAA88569.1|  202|Caenorhabditis elegans Hypothetical
           protein ZK892.7 protein.
          Length = 202

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 104 SLQEHL*NCHGYKKTASSPCC 166
           S+++HL + HGY    S  CC
Sbjct: 57  SIKKHLQHAHGYVDVQSCSCC 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,026,799
Number of Sequences: 27780
Number of extensions: 186189
Number of successful extensions: 483
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 451081596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)