Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_E05
         (363 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    25   3.6  
SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac...    24   8.3  

>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 25.0 bits (52), Expect = 3.6
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +1

Query: 40  FGDVPMLGICIGITS*RSTKRSACSSSGRDPSTRRIT 150
           F D P+L IC   T  +S  RSA +++ R P T   T
Sbjct: 453 FYDEPLLKICQEATQPKSLYRSASAAANR-PKTATTT 488


>SPBC1539.09c |trp1||anthranilate synthase component
           II|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 759

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 43  GDVPMLGICIGITS*RSTKRSACSSSG 123
           G +P+LG+C+G+     T      S+G
Sbjct: 100 GKIPILGVCMGLQCIFETMGGKVDSAG 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 764,836
Number of Sequences: 5004
Number of extensions: 9739
Number of successful extensions: 23
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)