Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_E04
(352 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide mc... 38 6e-04
SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide mc... 38 6e-04
SPAC57A10.09c |||High-mobility group non-histone chromatin prote... 36 0.002
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 31 0.069
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl... 28 0.49
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual 26 2.0
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 25 4.5
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce... 24 6.0
SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual 24 7.9
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 24 7.9
>SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide
mc|Schizosaccharomyces pombe|chr 2|||Manual
Length = 181
Score = 37.5 bits (83), Expect = 6e-04
Identities = 13/55 (23%), Positives = 31/55 (56%)
Frame = +2
Query: 50 AIRKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSNER 214
++RK T++ RP +A++L+ + +P + ++++K GEMW++ +
Sbjct: 92 SLRKDTTSTERTPRPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRNESK 146
>SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide
mc|Schizosaccharomyces pombe|chr 2|||Manual
Length = 181
Score = 37.5 bits (83), Expect = 6e-04
Identities = 13/55 (23%), Positives = 31/55 (56%)
Frame = +2
Query: 50 AIRKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSNER 214
++RK T++ RP +A++L+ + +P + ++++K GEMW++ +
Sbjct: 92 SLRKDTTSTERTPRPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRNESK 146
>SPAC57A10.09c |||High-mobility group non-histone chromatin
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 35.5 bits (78), Expect = 0.002
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Frame = +2
Query: 56 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWK---SNER*QY 223
RKK+ T PKR MSA+M + RE++K+++P ++ G+ WK S ER Y
Sbjct: 9 RKKDPNT--PKRNMSAFMFFSIENREKMKTDNPDATFGQLGSLLGKRWKELTSTEREPY 65
>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 30.7 bits (66), Expect = 0.069
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = +2
Query: 56 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLK---VTEIAKKGGEMWKS 205
++K + +PKRP SAY L+ + R +IK E G K V E+ K E W S
Sbjct: 108 KRKARDPAQPKRPPSAYNLFQKNQRSEIK-ESLGEKSNDVKEVNKAMHEKWGS 159
Score = 27.1 bits (57), Expect = 0.85
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +3
Query: 213 DNSIWEEKAANAKEQYAKDLESYNAN 290
D +EE+A+ +E Y +++ +YNA+
Sbjct: 164 DRKTYEEEASKLREAYEEEMAAYNAS 189
>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
Plh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 623
Score = 27.9 bits (59), Expect = 0.49
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = +2
Query: 74 TDKPKRPMSA--YMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSN 208
TDKP + S + L+ E +S+HP + V + G E W N
Sbjct: 119 TDKPSQSPSGNEVQVGLDMYNEGYRSDHPVIMVPGVISSGLESWSFN 165
>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
Length = 426
Score = 25.8 bits (54), Expect = 2.0
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -3
Query: 269 VFSILFFSVGCFLFPNTVIFHWISTFHLLFW 177
V S L+ +GCF V+ S LL+W
Sbjct: 353 VLSALYLYIGCFHMHTQVLNRMSSALPLLYW 383
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 24.6 bits (51), Expect = 4.5
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 77 DKPKRPMSAYMLWLNSAREQIKSE 148
D PK+ +AY+L LN + E KSE
Sbjct: 218 DMPKQVKNAYILILNVSLEYEKSE 241
>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 24.2 bits (50), Expect = 6.0
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = -3
Query: 260 ILFFSVGCFLFPNTVIFHWISTFHLLFWLFQ*LSAQDVQT*SVLWH 123
I+FF+V + +P++ + + + + +F LSA SV+WH
Sbjct: 219 IVFFAVLAYFYPSSSSWVSSNVSNRIVRIFFLLSAMKCLGCSVIWH 264
>SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual
Length = 332
Score = 23.8 bits (49), Expect = 7.9
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = -2
Query: 84 GLSVILFFFLMAKIWKLF 31
G+++ FF+L+ +WK F
Sbjct: 310 GVAIFSFFYLLLYLWKRF 327
>SPAPB8E5.07c |||ribosome biogenesis protein
Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1163
Score = 23.8 bits (49), Expect = 7.9
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -2
Query: 243 WLLSLPKYCYLSLDFHIS 190
W L LP YCYL LD S
Sbjct: 517 WSL-LPGYCYLPLDLQSS 533
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,461,581
Number of Sequences: 5004
Number of extensions: 28008
Number of successful extensions: 69
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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