Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_E04
(352 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4 p... 48 1e-06
AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3... 45 1e-05
U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian ... 44 3e-05
AL110490-14|CAB54448.2| 95|Caenorhabditis elegans Hypothetical... 43 5e-05
AF056576-1|AAC78598.1| 95|Caenorhabditis elegans high mobility... 43 5e-05
U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2... 42 1e-04
U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2... 42 1e-04
U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2... 42 1e-04
AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility... 42 1e-04
Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical pr... 41 2e-04
U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian ... 40 4e-04
U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying defe... 39 9e-04
U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying defe... 39 9e-04
U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying defe... 39 9e-04
U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying defe... 39 9e-04
AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain pr... 39 9e-04
Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical pr... 31 0.23
Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical p... 31 0.23
Z50797-9|CAL36516.1| 640|Caenorhabditis elegans Hypothetical pr... 31 0.23
AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical... 31 0.31
Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical pr... 30 0.54
Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical p... 30 0.54
Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical pr... 30 0.54
AF067217-5|AAO38635.1| 856|Caenorhabditis elegans Hypothetical ... 28 2.2
AF067217-4|AAF99978.1| 887|Caenorhabditis elegans Hypothetical ... 28 2.2
AF000265-2|AAO38667.1| 887|Caenorhabditis elegans Paz/piwi doma... 28 2.2
AF000265-1|AAB52946.2| 913|Caenorhabditis elegans Paz/piwi doma... 28 2.2
AC024777-1|AAF60563.1| 133|Caenorhabditis elegans Hypothetical ... 28 2.2
Z47745-3|CAA87666.1| 313|Caenorhabditis elegans Hypothetical pr... 27 2.9
Z92829-12|CAO82019.1| 255|Caenorhabditis elegans Hypothetical p... 27 3.8
Z50177-2|CAA90544.1| 336|Caenorhabditis elegans Hypothetical pr... 27 5.0
AC024211-8|AAF36062.1| 832|Caenorhabditis elegans Hypothetical ... 27 5.0
Z82060-6|CAB04887.1| 301|Caenorhabditis elegans Hypothetical pr... 26 6.6
U39849-2|AAN63462.2| 370|Caenorhabditis elegans Hypothetical pr... 26 6.6
Z68006-1|CAA91998.1| 251|Caenorhabditis elegans Hypothetical pr... 26 8.7
>U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4
protein.
Length = 697
Score = 48.4 bits (110), Expect = 1e-06
Identities = 22/49 (44%), Positives = 32/49 (65%)
Frame = +2
Query: 59 KKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKS 205
KK+K + PKR SAYM W ++R ++K + G V ++AKKGG WK+
Sbjct: 548 KKDKDPNAPKRATSAYMQWFLASRNELKED--GDSVADVAKKGGAKWKT 594
Score = 29.9 bits (64), Expect = 0.54
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 213 DNSIWEEKAANAKEQYAKDLESYNAN 290
D WEEKA K +Y K+++ Y N
Sbjct: 599 DKKKWEEKAEEDKSRYEKEMKEYRKN 624
>AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3
protein.
Length = 689
Score = 45.2 bits (102), Expect = 1e-05
Identities = 20/49 (40%), Positives = 31/49 (63%)
Frame = +2
Query: 59 KKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKS 205
KK K ++PKR +AY++W N+ R +K + G + ++AKK G WKS
Sbjct: 553 KKTKDPNEPKRATTAYIIWFNANRNSMKED--GDTLGDVAKKAGAKWKS 599
Score = 25.8 bits (54), Expect = 8.7
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +3
Query: 213 DNSIWEEKAANAKEQYAKDLESYNAN 290
D W +KAA K +Y +++ Y N
Sbjct: 604 DKKEWNDKAAQDKARYEAEMKEYKKN 629
>U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 2, isoform a protein.
Length = 283
Score = 44.0 bits (99), Expect = 3e-05
Identities = 18/45 (40%), Positives = 30/45 (66%)
Frame = +2
Query: 68 KMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWK 202
K D+ KRPM+A+M+W R+++ E+P + +EI+K+ G WK
Sbjct: 55 KNDDRVKRPMNAFMVWSRGQRKKMALENPKMHNSEISKRLGTEWK 99
>AL110490-14|CAB54448.2| 95|Caenorhabditis elegans Hypothetical
protein Y48B6A.14 protein.
Length = 95
Score = 43.2 bits (97), Expect = 5e-05
Identities = 20/46 (43%), Positives = 27/46 (58%)
Frame = +2
Query: 62 KNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMW 199
K K + PKR MSA+ W+ RE+IK PG+ V ++AK G W
Sbjct: 21 KAKDPNAPKRAMSAFFFWMQENRERIKK--PGMGVADVAKAAGVEW 64
Score = 30.3 bits (65), Expect = 0.41
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +3
Query: 129 ENRSSLNILGXXXXXXXXXXXXCGNPMKDNSIWEEKAANAKEQYAKDLESY 281
ENR + G + D S WE+KAA+ K++Y D+ +Y
Sbjct: 41 ENRERIKKPGMGVADVAKAAGVEWGKLTDKSRWEKKAADDKKRYEVDIANY 91
>AF056576-1|AAC78598.1| 95|Caenorhabditis elegans high mobility
group protein 1.1 protein.
Length = 95
Score = 43.2 bits (97), Expect = 5e-05
Identities = 20/46 (43%), Positives = 27/46 (58%)
Frame = +2
Query: 62 KNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMW 199
K K + PKR MSA+ W+ RE+IK PG+ V ++AK G W
Sbjct: 21 KAKDPNAPKRAMSAFFFWMQENRERIKK--PGMGVADVAKAAGVEW 64
Score = 30.3 bits (65), Expect = 0.41
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +3
Query: 129 ENRSSLNILGXXXXXXXXXXXXCGNPMKDNSIWEEKAANAKEQYAKDLESY 281
ENR + G + D S WE+KAA+ K++Y D+ +Y
Sbjct: 41 ENRERIKKPGMGVADVAKAAGVEWGKLTDKSRWEKKAADDKKRYEVDIANY 91
>U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2,
isoform b protein.
Length = 234
Score = 41.9 bits (94), Expect = 1e-04
Identities = 17/49 (34%), Positives = 30/49 (61%)
Frame = +2
Query: 56 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWK 202
++ K PKR +SA+ + R +I++ HP KV ++A++ G+MWK
Sbjct: 125 KRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWK 173
Score = 29.1 bits (62), Expect = 0.94
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Frame = +2
Query: 20 HQFKNNFQIFAIRKKNKMTDKPKR-PMSAYMLWLNSAREQIKSEHPG--LKVTEIAKKGG 190
HQ N M P R S Y ++ E+ K ++P ++VTEI+KK
Sbjct: 22 HQLPNPSATMYQATPRDMGKPPVRGKTSPYGFFVKMCYEEHKKKYPNENVQVTEISKKCS 81
Query: 191 EMWKS 205
E WK+
Sbjct: 82 EKWKT 86
Score = 26.2 bits (55), Expect = 6.6
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +3
Query: 204 PMKDNSIWEEKAANAKEQYAKDLESYNA 287
P + ++E+KA K++YA ++ +Y A
Sbjct: 176 PQETKDMYEQKAQADKDRYADEMRNYKA 203
>U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2,
isoform c protein.
Length = 233
Score = 41.9 bits (94), Expect = 1e-04
Identities = 17/49 (34%), Positives = 30/49 (61%)
Frame = +2
Query: 56 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWK 202
++ K PKR +SA+ + R +I++ HP KV ++A++ G+MWK
Sbjct: 124 KRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWK 172
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +2
Query: 98 SAYMLWLNSAREQIKSEHPG--LKVTEIAKKGGEMWKS 205
S Y ++ E+ K ++P ++VTEI+KK E WK+
Sbjct: 50 SPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKT 87
Score = 26.2 bits (55), Expect = 6.6
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +3
Query: 204 PMKDNSIWEEKAANAKEQYAKDLESYNA 287
P + ++E+KA K++YA ++ +Y A
Sbjct: 175 PQETKDMYEQKAQADKDRYADEMRNYKA 202
>U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2,
isoform a protein.
Length = 235
Score = 41.9 bits (94), Expect = 1e-04
Identities = 17/49 (34%), Positives = 30/49 (61%)
Frame = +2
Query: 56 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWK 202
++ K PKR +SA+ + R +I++ HP KV ++A++ G+MWK
Sbjct: 126 KRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWK 174
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +2
Query: 98 SAYMLWLNSAREQIKSEHPG--LKVTEIAKKGGEMWKS 205
S Y ++ E+ K ++P ++VTEI+KK E WK+
Sbjct: 50 SPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKT 87
Score = 26.2 bits (55), Expect = 6.6
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +3
Query: 204 PMKDNSIWEEKAANAKEQYAKDLESYNA 287
P + ++E+KA K++YA ++ +Y A
Sbjct: 177 PQETKDMYEQKAQADKDRYADEMRNYKA 204
>AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility
group protein 1.2 protein.
Length = 235
Score = 41.9 bits (94), Expect = 1e-04
Identities = 17/49 (34%), Positives = 30/49 (61%)
Frame = +2
Query: 56 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWK 202
++ K PKR +SA+ + R +I++ HP KV ++A++ G+MWK
Sbjct: 126 KRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWK 174
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +2
Query: 98 SAYMLWLNSAREQIKSEHPG--LKVTEIAKKGGEMWKS 205
S Y ++ E+ K ++P ++VTEI+KK E WK+
Sbjct: 50 SPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKT 87
Score = 26.2 bits (55), Expect = 6.6
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +3
Query: 204 PMKDNSIWEEKAANAKEQYAKDLESYNA 287
P + ++E+KA K++YA ++ +Y A
Sbjct: 177 PQETKDMYEQKAQADKDRYADEMRNYKA 204
>Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical
protein F40E10.2 protein.
Length = 212
Score = 41.1 bits (92), Expect = 2e-04
Identities = 16/42 (38%), Positives = 27/42 (64%)
Frame = +2
Query: 77 DKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWK 202
D KRPM+A+M+W R ++ ++P + +EI+K+ G WK
Sbjct: 46 DHVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWK 87
>U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 1 protein.
Length = 404
Score = 40.3 bits (90), Expect = 4e-04
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = +2
Query: 68 KMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKS 205
K ++ KRPM+A+M+W R +I P + EI+K+ G W+S
Sbjct: 88 KSSNHIKRPMNAFMVWSQMERRKICEHQPDMHNAEISKQLGSRWRS 133
>U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying
defective protein 13,isoform d protein.
Length = 319
Score = 39.1 bits (87), Expect = 9e-04
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +2
Query: 56 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWK--SNER*QYLG 229
R + K + KRPM+A+M+W R +I +P + + I+K G WK SN Q
Sbjct: 169 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYY 228
Query: 230 RESSQ 244
E S+
Sbjct: 229 EEQSR 233
>U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying
defective protein 13,isoform b protein.
Length = 316
Score = 39.1 bits (87), Expect = 9e-04
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +2
Query: 56 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWK--SNER*QYLG 229
R + K + KRPM+A+M+W R +I +P + + I+K G WK SN Q
Sbjct: 166 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYY 225
Query: 230 RESSQ 244
E S+
Sbjct: 226 EEQSR 230
>U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying
defective protein 13,isoform c protein.
Length = 422
Score = 39.1 bits (87), Expect = 9e-04
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +2
Query: 56 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWK--SNER*QYLG 229
R + K + KRPM+A+M+W R +I +P + + I+K G WK SN Q
Sbjct: 272 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYY 331
Query: 230 RESSQ 244
E S+
Sbjct: 332 EEQSR 336
>U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying
defective protein 13,isoform a protein.
Length = 470
Score = 39.1 bits (87), Expect = 9e-04
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +2
Query: 56 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWK--SNER*QYLG 229
R + K + KRPM+A+M+W R +I +P + + I+K G WK SN Q
Sbjct: 320 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYY 379
Query: 230 RESSQ 244
E S+
Sbjct: 380 EEQSR 384
>AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain
protein COG-2 protein.
Length = 470
Score = 39.1 bits (87), Expect = 9e-04
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +2
Query: 56 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWK--SNER*QYLG 229
R + K + KRPM+A+M+W R +I +P + + I+K G WK SN Q
Sbjct: 320 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYY 379
Query: 230 RESSQ 244
E S+
Sbjct: 380 EEQSR 384
>Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical protein
T22H6.6a protein.
Length = 1405
Score = 31.1 bits (67), Expect = 0.23
Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Frame = +2
Query: 38 FQIFAIRKKNKMT-DKP--KRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKS 205
FQ R+++K++ ++P +RPM+A+M++ R + ++P ++K GE W S
Sbjct: 825 FQSAKERRRSKVSANEPHVRRPMNAFMIFSKRHRPLVHQQYPNKDNRTVSKILGEWWYS 883
>Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical
protein T22H6.6a protein.
Length = 1405
Score = 31.1 bits (67), Expect = 0.23
Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Frame = +2
Query: 38 FQIFAIRKKNKMT-DKP--KRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKS 205
FQ R+++K++ ++P +RPM+A+M++ R + ++P ++K GE W S
Sbjct: 825 FQSAKERRRSKVSANEPHVRRPMNAFMIFSKRHRPLVHQQYPNKDNRTVSKILGEWWYS 883
>Z50797-9|CAL36516.1| 640|Caenorhabditis elegans Hypothetical
protein T22H6.6b protein.
Length = 640
Score = 31.1 bits (67), Expect = 0.23
Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Frame = +2
Query: 38 FQIFAIRKKNKMT-DKP--KRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKS 205
FQ R+++K++ ++P +RPM+A+M++ R + ++P ++K GE W S
Sbjct: 60 FQSAKERRRSKVSANEPHVRRPMNAFMIFSKRHRPLVHQQYPNKDNRTVSKILGEWWYS 118
>AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical
protein Y71H2AM.17 protein.
Length = 338
Score = 30.7 bits (66), Expect = 0.31
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = +2
Query: 83 PKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMW 199
P+RP+ YM + ++++E+P ++ +I K G+ W
Sbjct: 26 PERPLQPYMRYSRKMWPKVRAENPEAQLWDIGKMIGKYW 64
>Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical protein
C26C6.1a protein.
Length = 1883
Score = 29.9 bits (64), Expect = 0.54
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +2
Query: 71 MTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWK 202
MT K + S Y+L+ R++I E+P E++K G WK
Sbjct: 1445 MTPKAVKSKSGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWK 1488
>Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical
protein C26C6.1a protein.
Length = 1883
Score = 29.9 bits (64), Expect = 0.54
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +2
Query: 71 MTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWK 202
MT K + S Y+L+ R++I E+P E++K G WK
Sbjct: 1445 MTPKAVKSKSGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWK 1488
>Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical
protein C26C6.1b protein.
Length = 513
Score = 29.9 bits (64), Expect = 0.54
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +2
Query: 71 MTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWK 202
MT K + S Y+L+ R++I E+P E++K G WK
Sbjct: 75 MTPKAVKSKSGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWK 118
>AF067217-5|AAO38635.1| 856|Caenorhabditis elegans Hypothetical
protein F56A6.1b protein.
Length = 856
Score = 27.9 bits (59), Expect = 2.2
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = +2
Query: 68 KMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSNER*QYLGRESSQR 247
K+T KP +P+ Y + +N + +++++ AKKG E R Q + E+ +R
Sbjct: 49 KLTIKPNQPIYKYAVQVNYVFRKPDGTEATIEMSKSAKKGTEHDNDKTRCQNVYNEAIKR 108
>AF067217-4|AAF99978.1| 887|Caenorhabditis elegans Hypothetical
protein F56A6.1a protein.
Length = 887
Score = 27.9 bits (59), Expect = 2.2
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = +2
Query: 68 KMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSNER*QYLGRESSQR 247
K+T KP +P+ Y + +N + +++++ AKKG E R Q + E+ +R
Sbjct: 49 KLTIKPNQPIYKYAVQVNYVFRKPDGTEATIEMSKSAKKGTEHDNDKTRCQNVYNEAIKR 108
>AF000265-2|AAO38667.1| 887|Caenorhabditis elegans Paz/piwi
domain-containing protein1, isoform c protein.
Length = 887
Score = 27.9 bits (59), Expect = 2.2
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = +2
Query: 68 KMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSNER*QYLGRESSQR 247
K+T KP +P+ Y + +N + +++++ AKKG E R Q + E+ +R
Sbjct: 49 KLTIKPNQPIYKYAVQVNYVFRKPDGTEATIEMSKSAKKGTEHDNDKTRCQKVYNEAIKR 108
>AF000265-1|AAB52946.2| 913|Caenorhabditis elegans Paz/piwi
domain-containing protein1, isoform a protein.
Length = 913
Score = 27.9 bits (59), Expect = 2.2
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = +2
Query: 68 KMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSNER*QYLGRESSQR 247
K+T KP +P+ Y + +N + +++++ AKKG E R Q + E+ +R
Sbjct: 75 KLTIKPNQPIYKYAVQVNYVFRKPDGTEATIEMSKSAKKGTEHDNDKTRCQKVYNEAIKR 134
>AC024777-1|AAF60563.1| 133|Caenorhabditis elegans Hypothetical
protein Y42H9AR.2 protein.
Length = 133
Score = 27.9 bits (59), Expect = 2.2
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = -2
Query: 174 ISVTFSPGCS-DLICSLALLSHSI*ADIG-RFGLSVILFFF-LMAKIWKLFLNW 22
IS+ + GCS +I A + + +G F L + L F LMA I+ +FLNW
Sbjct: 16 ISLLITTGCSASIILFAATTKKDLTSCLGVAFILGICLMLFGLMACIFCIFLNW 69
>Z47745-3|CAA87666.1| 313|Caenorhabditis elegans Hypothetical
protein T19H5.4 protein.
Length = 313
Score = 27.5 bits (58), Expect = 2.9
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -1
Query: 271 KSLAYCSLALAAFSSQI-LLSFIGFPHFTSFFGYFSDFQP 155
K L+ C L L A S + LLS + P+F+ FF +FS+ P
Sbjct: 56 KFLSVC-LILCAISMHLSLLSQLAPPNFSPFFFFFSNRSP 94
>Z92829-12|CAO82019.1| 255|Caenorhabditis elegans Hypothetical
protein F10A3.17 protein.
Length = 255
Score = 27.1 bits (57), Expect = 3.8
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -3
Query: 311 TSFTTTTIGIVRF*VFSILFFSVGCFLFPNTVIFHWISTFHLLFWL 174
TSF+ ++ ++ + F GCF+FP T I F F+L
Sbjct: 181 TSFSKEDSKKIKDRLYEMEHFGDGCFIFPKTNIIEIARVFDSNFYL 226
>Z50177-2|CAA90544.1| 336|Caenorhabditis elegans Hypothetical
protein F46G10.4 protein.
Length = 336
Score = 26.6 bits (56), Expect = 5.0
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -1
Query: 250 LALAAFSSQILLSFIGFPHF--TSFFGYFSDFQPRMFRL 140
+A FSS+I + G P T F YF+D P FR+
Sbjct: 187 IAFRQFSSRIKVHTFGEPRVGDTVFASYFTDMVPYAFRV 225
>AC024211-8|AAF36062.1| 832|Caenorhabditis elegans Hypothetical
protein Y76B12C.1 protein.
Length = 832
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 260 ILFFSVGCFLFPNTVIFHWISTFHLLFWLFQ*LSAQD 150
ILF + C ++FHW + + LF L+Q L+ D
Sbjct: 364 ILFLTSSC-----AILFHWNACVYFLFSLYQGLTEDD 395
>Z82060-6|CAB04887.1| 301|Caenorhabditis elegans Hypothetical
protein T27F6.8 protein.
Length = 301
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2
Query: 204 DFHISPPFLAISVTFSPGCSDLI 136
D H+ F+A TF P CSD++
Sbjct: 197 DLHLDSGFIADRDTFWPKCSDIV 219
>U39849-2|AAN63462.2| 370|Caenorhabditis elegans Hypothetical
protein C06A8.8a protein.
Length = 370
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = +3
Query: 210 KDNSIWEEKAANAK--EQYAKDLESYNA 287
++ SIWEEK A A ++ KDL+S A
Sbjct: 320 REESIWEEKYAQASAIDESVKDLKSREA 347
>Z68006-1|CAA91998.1| 251|Caenorhabditis elegans Hypothetical
protein K09C8.2 protein.
Length = 251
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -2
Query: 219 CYLS-LDFHISPPFLAISVTFSPGCSDLICSLALLS 115
C L+ + FH+ F A+SV+F + +C + LLS
Sbjct: 41 CLLNYVSFHVGNDFYAVSVSFVHVGAVFVCIVILLS 76
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,129,248
Number of Sequences: 27780
Number of extensions: 156569
Number of successful extensions: 469
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -