Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_E03
         (320 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   0.91 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   2.8  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    20   6.4  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    20   6.4  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    20   6.4  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    20   8.4  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    20   8.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    20   8.4  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      20   8.4  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    20   8.4  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 23.0 bits (47), Expect = 0.91
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 222 PGT*EATLHLRRRRGAPTRAVGTHSTSRSSAS 127
           PG   A   L +RR     ++GT S++ S+AS
Sbjct: 158 PGAAAAAALLSKRRSVSECSLGTASSTSSTAS 189


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 2.8
 Identities = 8/32 (25%), Positives = 12/32 (37%)
 Frame = +1

Query: 220 RHHTDPFEPSPHLTSPHLTSPHLTSPHLTSPH 315
           +HH   + P    +  H    H   P +  PH
Sbjct: 320 QHHPSQYHPHRGSSPHHQHGNHTMGPTMGPPH 351



 Score = 20.2 bits (40), Expect = 6.4
 Identities = 8/30 (26%), Positives = 12/30 (40%)
 Frame = +3

Query: 216 YPASYRPF*TLTSPHLTSPHLTSPHLTSPH 305
           +P+ Y P    +  H    H   P +  PH
Sbjct: 322 HPSQYHPHRGSSPHHQHGNHTMGPTMGPPH 351


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 20.2 bits (40), Expect = 6.4
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 179 VLPPELSVRTPRVAVPLPSRASP 111
           +LPP     T  V+V L S ASP
Sbjct: 78  LLPPVQGTLTVNVSVLLLSLASP 100


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 20.2 bits (40), Expect = 6.4
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 179 VLPPELSVRTPRVAVPLPSRASP 111
           +LPP     T  V+V L S ASP
Sbjct: 78  LLPPVQGTLTVNVSVLLLSLASP 100


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 20.2 bits (40), Expect = 6.4
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 179 VLPPELSVRTPRVAVPLPSRASP 111
           +LPP     T  V+V L S ASP
Sbjct: 78  LLPPVQGTLTVNVSVLLLSLASP 100


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +3

Query: 126 GKRNCDSWSAY 158
           G R CD+W A+
Sbjct: 94  GPRFCDTWIAF 104


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = +1

Query: 223 HHTDPFEPSPHLTSPHLTSPHLTSPH 300
           HHT     S    +PH    H  +PH
Sbjct: 416 HHTMGHGHSHIHATPHHHHSHAATPH 441


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 104 ILEEKPSREAEL 139
           ILE+KPSR + L
Sbjct: 546 ILEKKPSRSSTL 557


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 10/32 (31%), Positives = 13/32 (40%)
 Frame = -2

Query: 238 KGLYDAGYLRGNAASAKAARCSHPSCRYALHE 143
           +G  DA      +A   A   +  SC Y  HE
Sbjct: 316 EGADDASERNPRSAVLAAREITSSSCSYMAHE 347


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 5/9 (55%), Positives = 6/9 (66%)
 Frame = +2

Query: 50  WHCFTMKQW 76
           WHCF   Q+
Sbjct: 607 WHCFNCTQY 615


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.129    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,611
Number of Sequences: 438
Number of extensions: 1396
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6968808
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.7 bits)