Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_E02
         (425 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.15 |ura5||orotate phosphoribosyltransferase Ura5 |Schizo...    34   0.011
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   1.2  
SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|...    26   2.8  
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    25   3.7  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    25   6.5  
SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c...    24   8.6  

>SPBC725.15 |ura5||orotate phosphoribosyltransferase Ura5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 33.9 bits (74), Expect = 0.011
 Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 6/103 (5%)
 Frame = +3

Query: 135 DAIKFGEFITKSGIKTPVYFDLRVIVSYPETMELIANLLYDFALENKIYNHICGVPYTAL 314
           + +KFG F  KSG K+P +F+        +   L           N  ++ I G  Y  +
Sbjct: 15  NVLKFGTFTLKSGRKSPYFFNSGNFTHGADLCALAEAYAETIIAMNVDFDVIFGPAYKGI 74

Query: 315 PIATLLSI----KSKKS--MLMRRKETKAYGTKKSIEGHYQSG 425
            +A + ++    K+ KS      RKE K++G   ++ G    G
Sbjct: 75  SLAAITAVKLYEKTGKSYGFAYNRKEAKSHGEGGNLVGAEMEG 117


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = +3

Query: 285 HICGVPYTALPIATLLSIK----SKKSMLMRRKETKAYGTKKSI 404
           H+C +PYT  P +++  I+    + K+   RR    +  T+KSI
Sbjct: 539 HLCTLPYTYQPFSSVEKIETPPNNSKNQTYRRSSRGSNKTRKSI 582


>SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 274

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = -2

Query: 190 YTGVLIPLLVINSPNFIASIENNLIATNSSRSLSLSHYYICYLFSNFKYTHT 35
           Y+  L  LL+I   + +  +  NL    S   +   HY + YLF    YTHT
Sbjct: 102 YSKKLQVLLLIYEIHTLRRLYENLRFRKSGSKMLAGHYLLGYLF----YTHT 149


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +3

Query: 228 MELIANLLYDFALENKIYNHICGVPYTALPIATLLSIKSKKSMLMRRKETK 380
           + L+ +L Y ++L N  Y+  C   YT      LLS    + +  R+K +K
Sbjct: 115 ISLLVSLFYFYSLPNFPYSKTCIFIYTVSSFIELLSEPYYEVLQWRQKFSK 165


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 353 NAYETKGNKSLRDEKINRRTLS 418
           +AY T+ N SLR++K NR + S
Sbjct: 173 SAYATRINGSLRNDKWNRSSFS 194


>SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +3

Query: 132 IDAIKFGEFITKSGIKTPVYFDLRVIVSYPETMELIANLLYD 257
           +D ++  + ++  G + PV  D+R  V     + LI+  LYD
Sbjct: 251 VDEVESSDSLSSLGKEKPVQIDVRWTVLCDLFLVLISKSLYD 292


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,655,643
Number of Sequences: 5004
Number of extensions: 31860
Number of successful extensions: 78
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)